Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0471
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77662-6|CAB01195.1|  210|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z77662-6|CAB01195.1|  210|Caenorhabditis elegans Hypothetical
           protein F47B8.6 protein.
          Length = 210

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +2

Query: 206 PTGYKLDLXPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHP 385
           P    L L P L +  Y G VKI  ++  E+ E+ +    +   +   +  +   +   P
Sbjct: 10  PIKILLQLDPNLGNNSYNGRVKIDYEFTGETSEIKIQTSRDFQWTSVRLATFYDFNEGCP 69

Query: 386 VXRVVVKELRM-DVKKPILTLYFEKPI-PKGTEG--HIXLTYRGNIH-MGVTEG 532
           V   V  E  + D +  ILTL    P+ P+ TE   +I L + G I+  G T G
Sbjct: 70  VYASVDCENYVHDAESEILTLPLGNPLTPETTENGFYIELEWTGPINPQGETTG 123


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
 Frame = +2

Query: 185 RLEKIVEPTGYKLDLXPFL-------DDGVYR--GTVKIQLKWLQESDELSLHCD 322
           RL + V PT Y+L +  FL       D+  +   G VKIQ++  +E+D + LH D
Sbjct: 31  RLPRNVFPTEYRLHITTFLPGYKWEADEKSFTFIGDVKIQIEVKEETDTIVLHTD 85


>U53154-3|AAC25852.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.8 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 557 LSCTXIXRIPR*HPCEYC 504
           + CT + R+P  HPC +C
Sbjct: 38  IECTCLHRLPSSHPCRHC 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,082,644
Number of Sequences: 27780
Number of extensions: 251461
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)