Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0470
(750 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 380 e-104
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 373 e-102
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 191 3e-96
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 329 5e-89
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 297 2e-79
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 207 5e-78
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 272 8e-72
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 268 7e-71
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 249 6e-65
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 248 1e-64
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 241 2e-62
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 158 1e-37
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 130 5e-29
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 116 8e-25
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 115 1e-24
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 113 6e-24
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 111 1e-23
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 110 4e-23
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 108 2e-22
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 106 5e-22
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 105 1e-21
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 101 1e-20
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 101 3e-20
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 99 1e-19
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 97 3e-19
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 93 7e-18
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 93 9e-18
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 93 9e-18
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 93 9e-18
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 89 1e-16
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 78 3e-13
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 74 4e-12
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 73 1e-11
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 71 4e-11
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 42 0.016
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 40 0.049
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.35
UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.5
UniRef50_UPI00006CF377 Cluster: Neurohypophysial hormones, N-ter... 33 5.7
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 33 5.7
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 7.5
UniRef50_A7SF81 Cluster: Predicted protein; n=1; Nematostella ve... 33 7.5
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.9
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 380 bits (935), Expect = e-104
Identities = 174/218 (79%), Positives = 194/218 (88%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PK MLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+KVDG
Sbjct: 15 PKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K
Sbjct: 75 KVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAK 134
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGT 194
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGH 684
+V+RERHPGSFDIVHIKDS GH FATRL NVFII +G+
Sbjct: 195 VVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGN 232
Score = 39.5 bits (88), Expect = 0.086
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEERD 748
GKG K YISLP GKG +L+ EERD
Sbjct: 229 GKGNKPYISLPKGKGVKLSIAEERD 253
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 373 bits (918), Expect = e-102
Identities = 164/218 (75%), Positives = 194/218 (88%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K
Sbjct: 75 KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTK 134
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G
Sbjct: 135 GIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGV 194
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGH 684
I +RERHPGSFD+VH+KD+ G++FATRL+N+F+I +G+
Sbjct: 195 ITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGN 232
Score = 40.3 bits (90), Expect = 0.049
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEERD 748
GKG K +ISLP GKG RLT EERD
Sbjct: 229 GKGNKPWISLPRGKGIRLTIAEERD 253
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 191 bits (465), Expect(2) = 3e-96
Identities = 88/106 (83%), Positives = 95/106 (89%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 348
KVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 75 KVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 184 bits (448), Expect(2) = 3e-96
Identities = 75/113 (66%), Positives = 100/113 (88%)
Frame = +1
Query: 346 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 525
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 526 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGH 684
+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+I +G+
Sbjct: 212 MCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGN 264
Score = 39.9 bits (89), Expect = 0.065
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEERD 748
GKG K ++SLP GKG RLT EERD
Sbjct: 261 GKGNKPWVSLPRGKGIRLTIAEERD 285
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 329 bits (808), Expect = 5e-89
Identities = 149/217 (68%), Positives = 179/217 (82%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PKH MLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K
Sbjct: 75 KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQK 134
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGV 194
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQG 681
I +RE+H GSF+ +HI+DSTGH FATRL NV+ I +G
Sbjct: 195 IKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKG 231
Score = 36.3 bits (80), Expect = 0.81
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEE 742
GKGTK ++SLP GKG +LT EE
Sbjct: 229 GKGTKPWVSLPKGKGIKLTIIEE 251
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 297 bits (728), Expect = 2e-79
Identities = 131/217 (60%), Positives = 168/217 (77%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
P H ML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R IK+DG
Sbjct: 15 PHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
K+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G
Sbjct: 75 KIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTG 134
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG +GRVG
Sbjct: 135 AIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGV 194
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQG 681
IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+I +G
Sbjct: 195 IVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKG 231
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 207 bits (505), Expect(2) = 5e-78
Identities = 86/129 (66%), Positives = 111/129 (86%)
Frame = +1
Query: 298 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 477
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 478 IATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLN 657
+ T KI DF KF++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLS 195
Query: 658 NVFIIRQGH 684
N+F+I +G+
Sbjct: 196 NIFVIGKGN 204
Score = 107 bits (257), Expect(2) = 5e-78
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PKH MLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+DG
Sbjct: 15 PKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDG 74
Query: 211 K 213
K
Sbjct: 75 K 75
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 272 bits (666), Expect = 8e-72
Identities = 129/243 (53%), Positives = 171/243 (70%), Gaps = 1/243 (0%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
T P H +L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+KV
Sbjct: 27 TAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKV 86
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
DGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G
Sbjct: 87 DGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIG 146
Query: 385 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 564
K +P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G N+GRV
Sbjct: 147 AKGIPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRV 206
Query: 565 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQG-HXSVHLAAXRXGHXPXHXRG 741
GTI E+ SFDIVH+KD++G FATR+ NVF+I + H + L A R G P G
Sbjct: 207 GTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLISLPA-REGVRPSILEG 265
Query: 742 AGQ 750
Q
Sbjct: 266 INQ 268
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 268 bits (658), Expect = 7e-71
Identities = 128/217 (58%), Positives = 163/217 (75%)
Frame = +1
Query: 34 KHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGK 213
+H MLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q IKVDGK
Sbjct: 27 QHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVDGK 85
Query: 214 VRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKN 393
+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K
Sbjct: 86 IRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKG 145
Query: 394 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 573
+P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG N GR+G I
Sbjct: 146 IPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWGRIGVI 204
Query: 574 VSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGH 684
+RERHP SFD H+KD+ ++F+ +F+I +G+
Sbjct: 205 TNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGN 237
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 249 bits (609), Expect = 6e-65
Identities = 115/209 (55%), Positives = 148/209 (70%), Gaps = 2/209 (0%)
Frame = +1
Query: 70 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 243
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 244 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 423
MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 424 TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF 603
TIR+P+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I E+H GSF
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSF 317
Query: 604 DIVHIKDSTGHTFATRLNNVFIIRQGHXS 690
DI H+KD+ G+ FATRL N+F++ QG S
Sbjct: 318 DICHVKDAKGNAFATRLGNIFVLGQGKKS 346
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 248 bits (606), Expect = 1e-64
Identities = 114/220 (51%), Positives = 158/220 (71%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PK +L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+ I VDG
Sbjct: 15 PKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K
Sbjct: 75 KVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSK 134
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++ G N+GR+G
Sbjct: 135 GIPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGV 194
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGHXS 690
++ GS IV +KD G +F+T+ N+F+I +G S
Sbjct: 195 FINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKS 234
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 241 bits (589), Expect = 2e-62
Identities = 114/214 (53%), Positives = 143/214 (66%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PK ML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q L+ VD
Sbjct: 12 PKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDN 71
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T
Sbjct: 72 HPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATG 131
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
VP VTHDG IRYPDP + D+I ++ K +D IK G ++TGG N GR+G
Sbjct: 132 RVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRIGE 191
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 672
IV E HPG+F+I H+KD++G FATR N+F+I
Sbjct: 192 IVKVECHPGAFNIAHLKDASGAEFATRAANIFVI 225
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 158 bits (384), Expect = 1e-37
Identities = 81/223 (36%), Positives = 134/223 (60%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
T PK MLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++ IKV
Sbjct: 13 TAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKV 72
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 73 NGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN 132
Query: 385 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 564
+ +PY+V+ G +IR+ DP I + +I++ T+K++++I + ++ G+ GRV
Sbjct: 133 -QGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRV 191
Query: 565 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGHXSV 693
G +++ G + + D G+TF+ + +I + ++
Sbjct: 192 G-VINTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENI 233
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 130 bits (313), Expect = 5e-29
Identities = 77/212 (36%), Positives = 117/212 (55%), Gaps = 10/212 (4%)
Frame = +1
Query: 67 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 246
+A +P GPH + LPL++ +RN L YA T E K++ + +VDG VR D +P GF
Sbjct: 28 WAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGF 87
Query: 247 MDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 423
MDV+ + T E FR++ Y VK F +H I EE K +++ T L HDGR
Sbjct: 88 MDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146
Query: 424 TI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS 579
I R DP + + D++ + + +I IKF G + +I GGRN+GRVG + S
Sbjct: 147 NILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKS 206
Query: 580 RERHPG-SFDIVHIKDSTGHTFATRLNNVFII 672
++ G +V ++D++G+ F T L+ VF+I
Sbjct: 207 VQKGWGRKRTLVTLEDASGNLFQTSLDYVFVI 238
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 116 bits (278), Expect = 8e-25
Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 10/226 (4%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
P + L + + RPS GPH + + LPL++ +R+ LKYA E KI++ I +DG
Sbjct: 16 PANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDG 75
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVATG 384
R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V G
Sbjct: 76 LKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVKG 133
Query: 385 PKNVPYLVTHDGR--------TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMIT 540
N+ L HDGR + + + K DS+ + I I + F G L IT
Sbjct: 134 -GNI-QLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYIT 191
Query: 541 GGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQ 678
GG+++G IV E DIV +++ G F T VFI+ Q
Sbjct: 192 GGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 115 bits (277), Expect = 1e-24
Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 15/222 (6%)
Frame = +1
Query: 52 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 231
K GG +APRP GPH + +PL+I +R+ L YA E KI+ + I VDG VR +P
Sbjct: 26 KEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPK 85
Query: 232 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 411
+P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K +
Sbjct: 86 FPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITM 145
Query: 412 HDGRT--IRYPDP------LIKVNDSIQLDI------ATTKIMDFIKFESGNLCMITGGR 549
HDG+ + DP + V DS+ L++ + K++D I FE G GR
Sbjct: 146 HDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGR 205
Query: 550 NLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFII 672
+ G VG +V + G D++ +++ G F T + I
Sbjct: 206 HSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAI 247
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 113 bits (271), Expect = 6e-24
Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 1/213 (0%)
Frame = +1
Query: 67 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 246
+ P P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GF
Sbjct: 23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGF 82
Query: 247 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 426
MDV+ I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 83 MDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
Query: 427 IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPG-SF 603
D KV D + + KI + IK + GN IT G ++ + GTI E G S
Sbjct: 141 FITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSA 200
Query: 604 DIVHIKDSTGHTFATRLNNVFIIRQGHXSVHLA 702
++VH ++ F+T ++VF+I S L+
Sbjct: 201 NLVHFQEG----FSTIKDHVFMIGSSKFSFVLS 229
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 111 bits (268), Expect = 1e-23
Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 4/227 (1%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PK + + +PS G H + L L + +R+ LK A E +I+ + VDG
Sbjct: 16 PKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDG 75
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 76 RVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKG 133
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+ HDG+ + + V D I L + +I + + + G +ITGG++ G +GT
Sbjct: 134 GKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGT 193
Query: 571 ----IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGHXSVHL 699
IV+ +P + + I++S F T + F++ + ++ L
Sbjct: 194 VSEIIVNESSNPNT---IIIENSAKDEFLTLKDYAFVVGEDAPAISL 237
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 110 bits (264), Expect = 4e-23
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 9/209 (4%)
Frame = +1
Query: 64 VYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAG 243
V+ +PS GPH L +P+ I LR+ YA T E +I+ R+I+VDG+V TD +P G
Sbjct: 29 VWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVVTDYKFPVG 88
Query: 244 FMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 423
MDV+ I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 424 TI-------RYPDPL-IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI-V 576
+ Y + K D++ + I I+ + FE G L ++ GRN+G +G I
Sbjct: 149 NVLIRKGSEAYSTAISYKTYDALLITIPRQSIVSHVPFEVGTLAIVVDGRNVGFMGRINA 208
Query: 577 SRERHPGSFDIVHIKDSTGHTFATRLNNV 663
++ S +V ++D++G T L V
Sbjct: 209 IQQVFKRSRALVELEDASGAKSRTILQYV 237
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 108 bits (259), Expect = 2e-22
Identities = 65/177 (36%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Frame = +1
Query: 52 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 231
K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ + +KVDG VR D
Sbjct: 18 KKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYK 77
Query: 232 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 411
+P G MDV+ I T E++R++ D + + I+ EEA KL +V+ L
Sbjct: 78 FPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHF 137
Query: 412 HDGR---TIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 573
HDGR T IK DS+ D+ I I + G ++ G N+G GT+
Sbjct: 138 HDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 106 bits (255), Expect = 5e-22
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 3/219 (1%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
T P+ +++ G ++ +PS GPH +PL + LR+ YA T E I+ + +KV
Sbjct: 8 TSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKV 67
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
DGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 68 DGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMV 127
Query: 385 PKNVPYLVTHDGRTI---RYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 555
L HDGR I + + S+ +++ K+MD+ + + G N+
Sbjct: 128 KAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNV 187
Query: 556 GRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 672
GR GT+++ R D + + F T LN + +I
Sbjct: 188 GRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVI 226
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 105 bits (252), Expect = 1e-21
Identities = 53/211 (25%), Positives = 103/211 (48%)
Frame = +1
Query: 61 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 240
G++ + S+GPH + + L+ ++ A E K+VK + V+GK +P
Sbjct: 25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPI 84
Query: 241 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 420
MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D
Sbjct: 85 SLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDL 144
Query: 421 RTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGS 600
R ++ IKV DS+ + +I+ +KFE G+LC+IT G++LG + I +
Sbjct: 145 RELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSL 204
Query: 601 FDIVHIKDSTGHTFATRLNNVFIIRQGHXSV 693
++H++ G + +++ +I + S+
Sbjct: 205 RKMIHLEKIDGKKLTKKCSDLLVIGESKTSI 235
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 101 bits (243), Expect = 1e-20
Identities = 71/216 (32%), Positives = 102/216 (47%), Gaps = 8/216 (3%)
Frame = +1
Query: 76 RPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 255
R GPHK++E +PL I L+ LK T E +I+ + VDGKVR D YP G MDV
Sbjct: 25 RSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDV 84
Query: 256 VSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRY 435
V I + R+I D T I+ E+AKYK ++ T V L DGR I
Sbjct: 85 VEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILL 144
Query: 436 P-DPLIKVN----DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI--VSRERHP 594
+ L + N ++++++ KI + G MI GGRN G G I + ++
Sbjct: 145 KGEELSQYNLPTLTTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYK 204
Query: 595 G-SFDIVHIKDSTGHTFATRLNNVFIIRQGHXSVHL 699
+ +V ++ G TF T L NV I + +L
Sbjct: 205 RIKYSLVTLEGKDGSTFQTNLINVMAIGENEADSNL 240
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 101 bits (241), Expect = 3e-20
Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 2/200 (1%)
Frame = +1
Query: 79 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 258
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 259 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 435
SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVT 146
Query: 436 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF-DIV 612
I +D + + I +I + +K G+ ITGG ++G + TI S E S ++V
Sbjct: 147 DRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATIKSIEVKKSSVKNMV 206
Query: 613 HIKDSTGHTFATRLNNVFII 672
++ + F+T + +F++
Sbjct: 207 YLNEG----FSTIKDYMFVV 222
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 99.1 bits (236), Expect = 1e-19
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 1/226 (0%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
++PK + + G + GPH LPL + +R+ LK E +I+ + + V
Sbjct: 8 SVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLV 67
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
DG R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 68 DGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTV 126
Query: 385 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 564
L +DG I + DS+ L I ++ +KFE GNL M+ GG++ G
Sbjct: 127 KGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGET 185
Query: 565 GTIVS-RERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGHXSVHL 699
G I+ RE + V I T F T + V +I + + L
Sbjct: 186 GKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGEDKPEIRL 229
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 97.5 bits (232), Expect = 3e-19
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 7/220 (3%)
Frame = +1
Query: 67 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 246
+ + + GPH LP+ ++LR + A +EV KI+ QR + V+G+ D G
Sbjct: 23 FVMKTAPGPHNAG-ALPVGVWLREHIGLAQNASEVKKILHQRDVLVNGRACKDSRMGLGV 81
Query: 247 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 426
D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 82 FDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGAN 141
Query: 427 IRYPDPLIKVNDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIVSRERH 591
+ D K DS+ + + T +I+D + GN+ MI GG++ G+VG IV R
Sbjct: 142 V-LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIVEIIRT 200
Query: 592 PGSF--DIVHIKDSTGHTFATRLNNVFIIRQGHXSVHLAA 705
S ++ DS G F T VF++ + + L A
Sbjct: 201 ASSVPNHVILTDDSAGERFETIEEYVFMVGRSAIAPELEA 240
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 93.1 bits (221), Expect = 7e-18
Identities = 53/183 (28%), Positives = 90/183 (49%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
++PK + K + GPH + +PL + LR+ L E +++ + + V
Sbjct: 9 SVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLV 68
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
DG R D +P G MD+++I N +R++ D K R ++++ A KLC+++ +
Sbjct: 69 DGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSI 127
Query: 385 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 564
+ + +DG I DSI L + K++ IK+E GNL MI GG + G V
Sbjct: 128 KEGKIQMRLNDGVNI-IGSNNYNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEV 186
Query: 565 GTI 573
G+I
Sbjct: 187 GSI 189
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 92.7 bits (220), Expect = 9e-18
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 1/188 (0%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
T+P+ L + ++ +P+ G H C+PL + LR+ L A E +++ R + V
Sbjct: 10 TMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVLV 69
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
DG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 70 DGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVMGKSTI 127
Query: 385 PKNVPYLVTHDGRTIRYPD-PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 561
+ HDGR I D L D++ + + + F G +TGG ++G
Sbjct: 128 TDGKTQIHLHDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIGI 187
Query: 562 VGTIVSRE 585
+VSR+
Sbjct: 188 TAKVVSRD 195
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 92.7 bits (220), Expect = 9e-18
Identities = 53/169 (31%), Positives = 84/169 (49%)
Frame = +1
Query: 67 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 246
+ +P G H +PLV+ LR+ LK A +E+ KI+ + + VDGKVR D Y G
Sbjct: 24 WVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGM 83
Query: 247 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 426
D +SI N +R++ + G+F H + +A K+CK+ L HDG T
Sbjct: 84 FDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTT 141
Query: 427 IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 573
+ + K DS+ L + KI + G+L M+T G++ G +G +
Sbjct: 142 MIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 92.7 bits (220), Expect = 9e-18
Identities = 54/175 (30%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
Frame = +1
Query: 52 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 231
K G + +PS GPH +P+ ++LR+ L A EV ++ + VDG+ D
Sbjct: 23 KSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYK 82
Query: 232 YPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLV 408
+P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+ + Y +
Sbjct: 83 FPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTL 142
Query: 409 THDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 573
T DGRT D K + + +I KI + I E I G++ GR+G I
Sbjct: 143 T-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVI 195
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 89.0 bits (211), Expect = 1e-16
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 1/196 (0%)
Frame = +1
Query: 88 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 267
G HK +PL+I LR+ LK E+ +I+ L+ VDGKV + GFMD +++
Sbjct: 30 GSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVS 89
Query: 268 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 447
+ L + YD KG+ I E KL +VK + HDG T+
Sbjct: 90 GNDYL--VSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKD 147
Query: 448 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE-RHPGSFDIVHIKD 624
IK DS+ + I +I+D +KF GN ITGG ++G + TI S E + ++VH+ +
Sbjct: 148 IKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNE 207
Query: 625 STGHTFATRLNNVFII 672
F+T + VF++
Sbjct: 208 G----FSTVSSYVFVM 219
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 77.8 bits (183), Expect = 3e-13
Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 4/220 (1%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
T P + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R + +
Sbjct: 8 TAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQVLL 66
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
+G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 67 NGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTTI 126
Query: 385 PKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIA---TTKIMDFIKFESGNLCMITGGRNL 555
+ G + K DS+ + IA + + GN+ +I GG++
Sbjct: 127 KGGKTQINLTSGANF-IGEENCKGKDSLVIGIAGDDRFAVQQHFPYAVGNMAIIIGGQHT 185
Query: 556 GRVGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFII 672
+ G +V S + V I+D+ G+ F T + V++I
Sbjct: 186 MKTGKLVEILVQESSLPNRVIIEDADGNKFETIEDYVYMI 225
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 73.7 bits (173), Expect = 4e-12
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 2/218 (0%)
Frame = +1
Query: 25 TLPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
++P +++ + + GPH +PL+I LR+ L YA E + + + +
Sbjct: 9 SVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLI 67
Query: 205 DGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATG 384
+GK +D P G D+++ + E +R+ GR + I P+ A+ KL K+
Sbjct: 68 NGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHV 127
Query: 385 PKNVPYLVTHDGRT-IRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 561
L HDG T I D DSI + +++ ++E G L G + G
Sbjct: 128 SGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGE 187
Query: 562 VGTIVSRERHPGSF-DIVHIKDSTGHTFATRLNNVFII 672
VG + + PGS + V + G F T V +I
Sbjct: 188 VGEVEEIQVTPGSAQNNVIVSQDEGEGFETVEEYVVVI 225
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 72.5 bits (170), Expect = 1e-11
Identities = 45/162 (27%), Positives = 72/162 (44%)
Frame = +1
Query: 88 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 267
G H +P + LR+ L T E K + ++VDG RT + G MDVV +
Sbjct: 35 GAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKRTSLHHGIGLMDVVELG 94
Query: 268 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 447
T +++R++ +I E K+C+V + + HDGR++ D
Sbjct: 95 GTGDIYRMVPSGGAILKPVKIEAAEKDRKICRVTSKTSISGGRTQIGFHDGRSL-ISDEK 153
Query: 448 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 573
+ V DS + + KI+ + E G ++T G N G GTI
Sbjct: 154 VSVGDSCLVQVPGQKILKVARMEKGAHAVVTRGTNAGSTGTI 195
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 70.5 bits (165), Expect = 4e-11
Identities = 47/152 (30%), Positives = 76/152 (50%)
Frame = -1
Query: 705 GSEMYAXVPLPNYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQ 526
G + V + EHV + R + ++ GVL VHN EG + LA D V + DH Q
Sbjct: 42 GKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQ 101
Query: 525 VPRLKLDEVHNLRSCNV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVL 346
++LD + +L +V +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 345 SLLRGDTVDCESALNIID*TKQFISLLN*DNI 250
D V ES+L ++D + FI+L + D++
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIALFDGDDV 193
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 41.9 bits (94), Expect = 0.016
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = -1
Query: 681 PLPNYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDE 502
PL N EH+ Q + + G+L+V ++G + L D ++T V ++ H +P +K DE
Sbjct: 116 PLANDEHIAQTSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDNIPNIKFDE 175
Query: 501 V 499
V
Sbjct: 176 V 176
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 40.3 bits (90), Expect = 0.049
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +1
Query: 82 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 261
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 262 IEKTNELFRLIYDVKG 309
IE +++ L+ + KG
Sbjct: 158 IEDMDQVLNLLSNYKG 173
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.35
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -1
Query: 282 QFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 103
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 102 QLV 94
Q +
Sbjct: 110 QFI 112
>UniRef50_A5BNN8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 906
Score = 34.7 bits (76), Expect = 2.5
Identities = 32/103 (31%), Positives = 44/103 (42%)
Frame = -2
Query: 548 RPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RMVRPSCVTKYGTFLGPVATR 369
RPP H SN + S + A S +S+TLI +R T TF+ VA
Sbjct: 298 RPPRTAHIAQSSNPLLSRLDSTASST-SQSITLIGSDYDAYLRYQAATS--TFVASVAQT 354
Query: 368 LTLHNLYLASSGVIRWIVNLPLTS*IRRNSSLVFSIETTSINP 240
+ + SS + WI++ + I N L SI TTS P
Sbjct: 355 DNVSVCFTQSSSLGPWILDSGASDHISGNKHLFSSITTTSALP 397
>UniRef50_UPI00006CF377 Cluster: Neurohypophysial hormones,
N-terminal Domain containing protein; n=1; Tetrahymena
thermophila SB210|Rep: Neurohypophysial hormones,
N-terminal Domain containing protein - Tetrahymena
thermophila SB210
Length = 1770
Score = 33.5 bits (73), Expect = 5.7
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -2
Query: 695 CTLXCPCRIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDT 573
C CP R NLV K C L CT S C DT
Sbjct: 750 CDAKCPDRFFPDTTNLVCKPCHSTCLQCTNSSNQNCTKCDT 790
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.5 bits (73), Expect = 5.7
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 447 YQSQRFHPVRHCNYEDYGLHQV*VWELVY--DHGRP*LGACGHHRVPRETSRLLRHCAHQ 620
+ + + HP+R Y G+ V +LV DH R A HR R RL + H+
Sbjct: 31 FHAFKIHPLRIA-YRT-GIDVTLVQQLVSGEDHQRLFKAALARHRKSRRDQRLHKSLRHK 88
Query: 621 GLHGTHLRHEVEQ 659
G+ L+H++EQ
Sbjct: 89 GIAQAELQHKIEQ 101
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 7.5
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 403 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 537
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_A7SF81 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1089
Score = 33.1 bits (72), Expect = 7.5
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = -2
Query: 683 CPCRIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDSNLM 504
CP + ++ AK+ +++ + +K+PG D + R K+ P ++ FP N+
Sbjct: 571 CPVEVNEEVYQYYAKLLAMKARPLSSTKKPG--EEDDNIENRYKIIVPDAVNSFPTHNMS 628
Query: 503 KSIIFVVAMSNWMESLTLISG 441
S I + + LI G
Sbjct: 629 LSSILMYSPRTIKRIRNLIKG 649
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 43 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 204
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 794,483,134
Number of Sequences: 1657284
Number of extensions: 17608284
Number of successful extensions: 54327
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 51358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54275
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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