Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0470
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 322 2e-88
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 321 4e-88
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 320 1e-87
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 2.3
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 29 3.9
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.2
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 6.9
04_04_1303 - 32487174-32487871,32488583-32489123 28 6.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.9
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 9.1
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 9.1
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 322 bits (790), Expect = 2e-88
Identities = 143/214 (66%), Positives = 174/214 (81%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
P H MLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR + VDG
Sbjct: 31 PSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDG 90
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K
Sbjct: 91 KVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQK 150
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 151 GIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGV 210
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFII 672
I SRE+H GSF+ +H++D+ GH FATR+ NVF I
Sbjct: 211 IKSREKHKGSFETIHVEDALGHQFATRMGNVFTI 244
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 3 KKHLKRLNAPKAW 41
KKHLKRLNAP W
Sbjct: 22 KKHLKRLNAPSHW 34
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEE 742
GK K ++SLP GKG +L+ EE
Sbjct: 245 GKERKPWVSLPKGKGIKLSIIEE 267
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 321 bits (788), Expect = 4e-88
Identities = 141/218 (64%), Positives = 177/218 (81%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PKH MLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGV 194
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGH 684
I +RE+H GSF+ +H++D+ GH FATRL NVF I +G+
Sbjct: 195 IKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGN 232
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEER 745
GKG K ++SLP GKG +L+ EE+
Sbjct: 229 GKGNKPWVSLPKGKGIKLSIIEEQ 252
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 3 KKHLKRLNAPKAW 41
KKHLKRLNAPK W
Sbjct: 6 KKHLKRLNAPKHW 18
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 320 bits (785), Expect = 1e-87
Identities = 140/218 (64%), Positives = 177/218 (81%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PKH MLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR + VDG
Sbjct: 15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDG 74
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K
Sbjct: 75 KVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQK 134
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
+PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 135 GIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGV 194
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGH 684
I +RE+H GSF+ +H++D+ GH FATRL NVF I +G+
Sbjct: 195 IKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGN 232
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEER 745
GKG K ++SLP GKG +L+ EE+
Sbjct: 229 GKGNKPWVSLPKGKGIKLSIIEEQ 252
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 3 KKHLKRLNAPKAW 41
KKHLKRLNAPK W
Sbjct: 6 KKHLKRLNAPKHW 18
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 668 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 546
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 133 SGKSPGASTRATCGDRLTVSVH 68
+G+SPG + RA GD L V+VH
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVH 71
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 566 APSCPARDI--PAPSTLCTSRTPRDTPSP 646
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 647 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 516
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 699 EMYAXVPLPNYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVP 520
E A P + + P GE ++R VL V AG++ G H P + R T+ P
Sbjct: 154 EAPAATPCFDRSVIKWPGGEEIARSVLRVR----AGLACRGTQAFHPPDIHRGRAATRTP 209
Query: 519 R 517
+
Sbjct: 210 K 210
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 283 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 387
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 643 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 548
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 409 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 543
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,416,614
Number of Sequences: 37544
Number of extensions: 520374
Number of successful extensions: 1631
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -