Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0470
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 360 e-100
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74) 27 0.59
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 30 1.7
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 5.3
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17) 29 5.3
SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09) 28 7.0
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_28160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8) 28 9.3
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 360 bits (885), Expect = e-100
Identities = 160/218 (73%), Positives = 189/218 (86%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
PKH MLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQRLIK+DG
Sbjct: 439 PKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDG 498
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G K
Sbjct: 499 KVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAK 558
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN+GRVG
Sbjct: 559 GVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGM 618
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGH 684
+ RE+H GSFDIVH+KD+TGH FATRL N+F+I +G+
Sbjct: 619 VTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGN 656
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEERD 748
GKG K Y+SLP GKG RL+ EERD
Sbjct: 653 GKGNKPYVSLPKGKGVRLSIAEERD 677
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 3 KKHLKRLNAPKAW 41
KKH+KRLNAPK W
Sbjct: 430 KKHMKRLNAPKHW 442
>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
Length = 483
Score = 27.1 bits (57), Expect(2) = 0.59
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = -2
Query: 725 GXCPXRXAARCTLXCPCRIMNTLFNLVAKVCPVE---SLMCTMSKEPGCLSRDTMVPT 561
G C AA C + CP I + VCP + + C ++P + T PT
Sbjct: 109 GKCSDECAACCPVCCPGVICRPVMVPRPPVCPCKQECNFCCIEEEKPTTTKKPTTKPT 166
Score = 23.4 bits (48), Expect(2) = 0.59
Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Frame = -2
Query: 572 MVPT-RPKLRPPVIIH 528
++PT RP + PP+IIH
Sbjct: 193 LIPTARPCMPPPIIIH 208
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +1
Query: 319 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 498
I +TP+ K C+V R++TGP +++ +G + +++ ++ + + +
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345
Query: 499 DFIKFESGNLCM 534
F FE G CM
Sbjct: 346 -FPDFEKGVACM 356
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = +1
Query: 145 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 312
+Y L ++ + + L++ G + P+YP+ ++ ++ +N+LF + R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +3
Query: 132 EES--SEVCFDRKRSPENCE 185
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
Length = 560
Score = 28.7 bits (61), Expect = 5.3
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLP-LVIFLRNRLKYALTGNEVLKIVKQRLI--K 201
PKHG+ + G V+ K E P ++F++ R+K L G + ++V++ +
Sbjct: 138 PKHGLFARPGVVHPHSDVDMISKTSEISPNAIVFIQTRMKRMLAGMRLRRLVERSGFERE 197
Query: 202 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 327
+D V+ P ++ +S + E F D + F I+R
Sbjct: 198 IDKHVQNTPASATASINQLS-DYLTECFST--DREKAFAIYR 236
>SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)
Length = 743
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 5 EAFEALKRSQSMXCWTNLA-VCMHRDRQPVPTSC 103
EAF+A+K +S W N+A +C+ R V T C
Sbjct: 674 EAFKAIKLIKSESVWENMARMCVKTKRLDVATVC 707
>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -2
Query: 209 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 93
PS++ F +FRT FP + RF R+ IT ++LW
Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128
>SB_28160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = -2
Query: 683 CPCRIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFP 519
CP + ++ AK+ +++ + +K+PG D + R K+ P ++ FP
Sbjct: 620 CPVEVNEEVYQYYAKLLAMKARPLSSTKKPG--EEDDNIENRYKIIVPDAVNSFP 672
>SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)
Length = 427
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 609 NVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCNV 475
NV +G S D + + Q+T + +++PRL D+ +R N+
Sbjct: 292 NVGSSGSSEIQQDSSKSGQITGNTTTSRIPRLAKDKKTQMRLRNI 336
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 337 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 507
E+A +C++ R+ P+ LV G +++ I + Q+ + + +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030
Query: 508 KFESGNLCMITGGRNLGRV 564
K + NLC G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,366,794
Number of Sequences: 59808
Number of extensions: 580321
Number of successful extensions: 1717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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