Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0470
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 305 3e-83
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 0.50
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 29 2.7
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 29 2.7
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.5
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.5
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 28 6.2
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 28 6.2
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.2
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 305 bits (748), Expect = 3e-83
Identities = 141/221 (63%), Positives = 173/221 (78%)
Frame = +1
Query: 31 PKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDG 210
P H MLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E KI+ QR+++VDG
Sbjct: 14 PSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDG 73
Query: 211 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 390
KVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K
Sbjct: 74 KVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNK 133
Query: 391 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 570
VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TGGRN+GRVG
Sbjct: 134 GVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGI 193
Query: 571 IVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIRQGHXSV 693
I RER PG+ DI+HIKDS GH+FATR++NVF+I +G+ ++
Sbjct: 194 IGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKAL 234
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +2
Query: 674 GKGTKAYISLPXGKGXRLTXXEERD 748
GKG KA +SLP G G RL+ EERD
Sbjct: 228 GKGNKALVSLPTGAGIRLSIAEERD 252
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect(2) = 0.50
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +3
Query: 537 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 638
HG G+ G H T L H H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676
Score = 25.4 bits (53), Expect(2) = 1.8
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Frame = +3
Query: 423 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 599
HH + + H P H ++ ++G H HG HH P
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGE-------HHHAPAHHGHH 542
Query: 600 LRHCAHQGLHGTH 638
H H G HG+H
Sbjct: 543 GEHGTHHGHHGSH 555
Score = 25.0 bits (52), Expect(2) = 4.0
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +3
Query: 567 HHRVPRETSRLLRHCAHQGLHGTH 638
HH P H H G HG+H
Sbjct: 474 HHHAPAHHGHHGEHGTHHGHHGSH 497
Score = 23.0 bits (47), Expect(2) = 1.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 612 AHQGLHGTHLRHEVEQRVHNS 674
AH G HG H H V H S
Sbjct: 572 AHHGHHGHHGSHGVHHGHHES 592
Score = 23.0 bits (47), Expect(2) = 0.50
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +3
Query: 612 AHQGLHGTHLRHEVEQRVHN 671
AH G HG H H H+
Sbjct: 684 AHHGHHGAHHEHGAHHGAHH 703
Score = 22.2 bits (45), Expect(2) = 4.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 612 AHQGLHGTHLRHEVEQRVHNS 674
AH G HG H H H+S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHS 557
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 307 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 438
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 95 WGPVDGLGAYTPPSLSNXPCFGS 27
+GP+ GLG +T P+L P FG+
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGN 97
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 95 WGPVDGLGAYTPPSLSNXPCFGS 27
+GP+ GLG +T P+L P FG+
Sbjct: 75 FGPIPGLGNFTLPTLGTLPGFGN 97
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 525 LVYDHGRP*LGACGHHRVPRETSRLLRH 608
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 525 LVYDHGRP*LGACGHHRVPRETSRLLRH 608
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = -1
Query: 702 SEMYAXVPLPNYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQV 523
SE+ P P+ + + + + V ++ + E + + A P T R TQ+
Sbjct: 820 SELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQI 879
Query: 522 PRLKLDEVHNL 490
+K E HNL
Sbjct: 880 FGIKASEAHNL 890
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = -1
Query: 702 SEMYAXVPLPNYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQV 523
SE+ P P+ + + + + V ++ + E + + A P T R TQ+
Sbjct: 820 SELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQI 879
Query: 522 PRLKLDEVHNL 490
+K E HNL
Sbjct: 880 FGIKASEAHNL 890
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 464 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 300
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,142,477
Number of Sequences: 27780
Number of extensions: 412499
Number of successful extensions: 1246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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