Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0469
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.0  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    22   6.0  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 600  AKEXII-GLRRAKRRNMERLALTCGGSAVNS 689
            A E I+ GL++    +ME LA T GG  V +
Sbjct: 1159 ASETILHGLKKYTNYSMEVLAYTSGGDGVRT 1189


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 111 SQLKSS*IPRLLMTCCERCQSLQ 43
           +Q+K + +P ++   CERC S Q
Sbjct: 50  NQIKGA-LPEIIGKNCERCDSRQ 71


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 282 TATETVLVKGLVMDHGARHPDMPKRVE 362
           TATE + + GL+ +      D P+ V+
Sbjct: 122 TATEQLCIGGLLYNERTHSCDWPENVD 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,608
Number of Sequences: 336
Number of extensions: 3017
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)