Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0469
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)              140   1e-33
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  89   4e-18
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   66   2e-11
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      37   0.020
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        29   4.0  
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)                     29   5.3  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       28   7.0  
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)                    28   9.3  
SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)              28   9.3  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score =  140 bits (338), Expect = 1e-33
 Identities = 60/98 (61%), Positives = 85/98 (86%)
 Frame = +3

Query: 3   DIFISEGLHPRIITEGFDIARNKSLEVLESMKISIEIARENLVDVARTSLKTKVHPSLAD 182
           D+++SEGLHPR++TEGF++A+ K+LEVLE +K+S E+ R+ L++VA+TSL+TKV   LAD
Sbjct: 209 DLYVSEGLHPRLVTEGFEVAKKKALEVLEEVKVSREMDRDTLINVAKTSLRTKVRTELAD 268

Query: 183 VLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATET 296
           +LT+  VDAVLTIR P KP+DLHMVE+MEM+HKT +++
Sbjct: 269 LLTEVVVDAVLTIRKPKKPIDLHMVEVMEMRHKTDSDS 306



 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 41/79 (51%), Positives = 56/79 (70%)
 Frame = +3

Query: 333 RHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVA 512
           R P  P  +    ++      + +  EVNSGFFYKS+E+REKLVAAER+F D +V+KI+ 
Sbjct: 282 RKPKKPIDLHMVEVMEMRHKTDSDSNEVNSGFFYKSSEEREKLVAAERKFTDDKVQKIID 341

Query: 513 LKKKLCDGTDKTFVVINQK 569
           LKK++C+G +K FVVINQK
Sbjct: 342 LKKQVCEGNNKGFVVINQK 360


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 4/244 (1%)
 Frame = +3

Query: 21  GLHPRIITEGFDIARNKSLEVLESMKISIEIAREN---LVDVARTSLKTKVHPSLADVLT 191
           G+HP  I +G+++A   +LE ++S+  +  + ++N   L+  A T+L +K+       L 
Sbjct: 125 GIHPIRIADGYELAAKIALEHMDSIADNFPVDKDNKESLIQTAMTTLGSKIVSRCHRPLA 184

Query: 192 DACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENA 368
           +  VDAVL++     K VD  ++++   +     +TVLVKG+V+D    HP MPK V++A
Sbjct: 185 EIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDDTVLVKGVVVDKDMSHPQMPKVVKDA 244

Query: 369 YILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKT 548
            I       E  K +        + ED +KL   ERE   + ++++      L       
Sbjct: 245 KIAILTCPFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQVKDTGANL------- 297

Query: 549 FVVINQKGIDPLSLDAFAKEXIIGLRRAKRRNMERLALTCGGSAVNSVDDLTENALSFAG 728
              I Q G D  +     +  +  +R      +E +A+  GG  V    +LT   L  AG
Sbjct: 298 --AICQWGFDDEANHLLLQNHLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGKAG 355

Query: 729 LXYE 740
           +  E
Sbjct: 356 IVRE 359


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 62/231 (26%), Positives = 112/231 (48%), Gaps = 5/231 (2%)
 Frame = +3

Query: 12  ISEGLHPRIITEGFDIARNKSLEVLESMKISI----EIARENLVDVARTSLKTKVHPSLA 179
           +S  +HP+ I  G+  +   + + LE+  +      E  RE+L+++ART+L +K+     
Sbjct: 114 VSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHR 173

Query: 180 DVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRV 359
           D      VDAVL ++  G   DL+ ++I++       ++ L +G ++D      + PK++
Sbjct: 174 DHFAKLAVDAVLRLKGSG---DLNAIQIIKKLGGGMVDSFLDEGFLLDKKI-GVNQPKKI 229

Query: 360 ENAYILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDG 536
           ENA IL  N  ++ +K +V  S     S      L  AE++ + ++V  I+  K  +   
Sbjct: 230 ENAKILIANTPMDADKIKVFGSRVRVDSTAKIADLEMAEKQKMKEKVEMII--KHDI--- 284

Query: 537 TDKTFVVINQKGIDPLSLDAFAKEXIIGLRRAKRRNMERLALTCGGSAVNS 689
               F  IN++ I       FA   ++ +  A    +ERLAL  GG  V++
Sbjct: 285 --NCF--INRQLIYNYPEQLFADAGVMAIEHADFEGVERLALVTGGEIVST 331


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
 Frame = +3

Query: 372 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTF 551
           +L CN  LEY+K E  +     S  D  +++  E EFI +   +++ALK  L        
Sbjct: 2   LLDCN--LEYKKGESQTSLELSSDTDFSRVLQLEEEFIKKMCDEVIALKPDL-------- 51

Query: 552 VVINQKGIDPLSLDAFAKEXIIGLRRAKRRNMERLALTCGGSAVNSVDDLTENAL-SFAG 728
            VI +KGI  L+     K  I  +RR ++ +  R+A  CG + VN  ++L E  + + AG
Sbjct: 52  -VITEKGISDLAQHFLMKANITAIRRVRKTDNNRIARACGATIVNRTEELKEEDIGTGAG 110

Query: 729 L 731
           L
Sbjct: 111 L 111


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
 Frame = +3

Query: 12  ISEGLHPRIITEGFDIARNKSLEVLESMKISI----EIARENLVDVARTSLKTKVHPSLA 179
           +S  +HP+ I  G+  +   + + LE+  +      E  R++L+++ART+L +K+     
Sbjct: 32  VSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIARTTLSSKILVQHR 91

Query: 180 DVLTDACVDAVLTIRTPGKPVDLHMVEIME 269
           D      VDAVL ++  G   DL+ ++I++
Sbjct: 92  DHFAKLAVDAVLRLKGSG---DLNAIQIIK 118


>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 603 KEXIIGLRRAKRRNMERLALTCGGSAVNSVDDLTENAL-SFAGL 731
           K  I  +RR ++ +  R+A  CG + VN  ++L E  + + AGL
Sbjct: 125 KANITAIRRVRKTDNNRIARACGATIVNRTEELKEEDIGTGAGL 168


>SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 342 DMPKRVENAYILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 509
           + PK++ENA IL  N  ++ +K +V  S     S     +L  AE++ +  +V  I+
Sbjct: 8   NQPKKIENAKILIANTPMDADKVKVFGSRVRVDSTAKIAELEKAEKQKMKDKVEMII 64


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 296 CTCKRSSNGSWCTS--PRY-AKACRKCIHSHM 382
           CTC+   +GS C S  PRY    C +C+ +++
Sbjct: 397 CTCRHGFSGSSCESCQPRYTGSECERCVTNYI 428


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
 Frame = +3

Query: 201 VDAVLTIRTP-----------GKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDM 347
           V+AV+ I+TP           G P  +H+ + +++K+K     V+    ++D+  +   M
Sbjct: 467 VEAVMKIKTPYGMQFRWRLPGGMPFHIHLKDNLKVKNKKRWSQVMYMSYILDY--KEGTM 524

Query: 348 PKRVENAYILTCNVSLEY 401
               EN YIL  +  + +
Sbjct: 525 GSTDENTYILATDADVRF 542


>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
          Length = 349

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 186 LTDACVDAVLTIRT--PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGAR 335
           LT    D +L +R+  PG+ V+ HM++ ++ K  T  E +    L   H +R
Sbjct: 124 LTPDVNDHMLQVRSHAPGERVNDHMLQTLQTKDTTLQEAITTATLARSHYSR 175


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 109  SIEIFIDSKTSNDLLRAMSKPS 44
            SIE+F+DS + ND+  A+ +P+
Sbjct: 1709 SIELFVDSTSENDVFTAVDEPN 1730


>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 233 QTC*SAHG*NYGDETQDCY*NCTCKRSSNGSWCTSP 340
           QTC   HG N+    QDC  N  C+   +    TSP
Sbjct: 767 QTCSVCHGKNFIIRCQDCVHNFLCQSCDDFVHTTSP 802


>SB_42803| Best HMM Match : CagY_M (HMM E-Value=1.3)
          Length = 364

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 544 RLSSLSTKKESTPCHWMLLPKXVLLDYAEQK 636
           RLS L  KK+   CH +L  +   LD  +QK
Sbjct: 241 RLSKLENKKQKMECHDLLADRHSKLDNEKQK 271


>SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)
          Length = 384

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 438 SAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGI 575
           ++EDR   V   +  +D+++ + +AL K L    ++TF  I +KG+
Sbjct: 2   ASEDRPPEVNTGKPELDEKILEWLALDKGLAVYLEQTFEDIKEKGV 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,757,421
Number of Sequences: 59808
Number of extensions: 383118
Number of successful extensions: 1102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)