BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0468 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 329 2e-91 SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 328 5e-91 SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 195 6e-51 SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 192 5e-50 SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 189 3e-49 SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 179 5e-46 SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 158 7e-40 SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 155 8e-39 SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 151 1e-37 SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 146 4e-36 SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 138 8e-34 SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 73 7e-26 SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 88 1e-18 SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 87 2e-18 SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 87 3e-18 SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 84 2e-17 SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 83 3e-17 SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 81 2e-16 SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 69 9e-13 SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 45 1e-05 SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 32 0.10 SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 29 0.94 SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.2 SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 28 1.6 SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 28 1.6 SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 27 2.2 SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 3.8 SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 26 5.0 SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 6.6 SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M... 25 8.7 SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 25 8.7 SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 8.7 >SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|Schizosaccharomyces pombe|chr 1|||Manual Length = 1199 Score = 329 bits (809), Expect = 2e-91 Identities = 146/242 (60%), Positives = 192/242 (79%) Frame = +1 Query: 25 DMIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNN 204 DM ++ EDD + YY++AH + E VTEQ SILV G LKEYQ++GL+W++SL+NN Sbjct: 379 DMDRRMNPEDDR----KIDYYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMISLYNN 434 Query: 205 NLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSV 384 +LNGILADEMGLGKTIQTI+L+T+L+EKK+ NGP+L+IVPLSTL+NW +EFE+WAP++ Sbjct: 435 HLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVK 494 Query: 385 VSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHC 564 + Y G PQ R+ + Q+R + F VLLTTYEY+IKD+ +L++++W YMIIDEGHRMKN Sbjct: 495 IVYKGPPQVRKALHPQVRHSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQS 554 Query: 565 KLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTG 744 KLT L T+Y + +RL+LTGTPLQN LPELWALLNF+LP IF S +F++W N FA TG Sbjct: 555 KLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTG 614 Query: 745 GK 750 G+ Sbjct: 615 GQ 616 >SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22|Schizosaccharomyces pombe|chr 3|||Manual Length = 1680 Score = 328 bits (806), Expect = 5e-91 Identities = 143/223 (64%), Positives = 185/223 (82%) Frame = +1 Query: 82 YYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTI 261 Y+ +AH +HE V EQ I V G LK+YQ+KGLEW++SL+NNNLNGILADEMGLGKTIQTI Sbjct: 847 YFKVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTI 905 Query: 262 ALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRS 441 A +TYL+EKK GP+LIIVPLSTL+NW++EFEKWAP+V ++Y G PQ R+ +Q+Q+RS Sbjct: 906 AFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRS 965 Query: 442 TKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLT 621 + FNVLLTT+EY+IKD+ +L++++W +MIIDEGHR+KN KLT L+T+Y + +RL+LT Sbjct: 966 SNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILT 1025 Query: 622 GTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTGGK 750 GTPLQN LPELWALLNF+LP IF S +F++W N FA TGG+ Sbjct: 1026 GTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQ 1068 >SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1388 Score = 195 bits (475), Expect = 6e-51 Identities = 91/220 (41%), Positives = 141/220 (64%), Gaps = 6/220 (2%) Frame = +1 Query: 49 EDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILAD 228 E+ T Y + + + +Q S + G L+++Q+ G+ W+ L++ N NGILAD Sbjct: 341 EESALSPSRGTNYGNSRPKYRKLEQQPSYITGGELRDFQLTGVNWMAYLWHKNENGILAD 400 Query: 229 EMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQ 408 EMGLGKT+QT+A ++YL + +GP+L++VPLST+ W WA ++ +SY G+ Sbjct: 401 EMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDMNCISYLGNTT 460 Query: 409 SRRLVQAQ------MRSTKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKL 570 SR++++ + KFN+LLTTYEYV+KD+ VL+ ++W+YM IDE HR+KN L Sbjct: 461 SRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLKNSESSL 520 Query: 571 TQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIF 690 + L + + +RLL+TGTPLQN + EL AL++FL+P F Sbjct: 521 YEAL-SQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKF 559 >SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1373 Score = 192 bits (468), Expect = 5e-50 Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 7/221 (3%) Frame = +1 Query: 49 EDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILAD 228 E+ Y + +Y+ + + +Q S + G ++++Q+ G+ W+ L++ N NGILAD Sbjct: 357 ENSPYLPYKGVFYN-TRPPYRKLEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILAD 415 Query: 229 EMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQ 408 EMGLGKT+QT+ ++YL+ K +GP+LI+VPLST+ W W P ++ + Y G+ + Sbjct: 416 EMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTE 475 Query: 409 SRRLVQ-------AQMRSTKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCK 567 SR ++ R KFN+LLTTYEY++KDK L ++W+Y+ IDE HR+KN Sbjct: 476 SRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESS 535 Query: 568 LTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIF 690 L + L + + +RLL+TGTPLQN L EL +L+NFL+P F Sbjct: 536 LYETL-SQFRTANRLLITGTPLQNNLKELASLVNFLMPGKF 575 >SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1288 Score = 189 bits (461), Expect = 3e-49 Identities = 96/206 (46%), Positives = 136/206 (66%), Gaps = 8/206 (3%) Frame = +1 Query: 124 QASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNG 303 Q L G L+EYQ GLEWL +L ++N NGILADEMGLGKTIQTIAL+ +L +K+ G Sbjct: 438 QVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENWG 497 Query: 304 PYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQA-QMRSTKFNVLLTTYEYV 480 P+LIIVP S + NW +EF+K+ P +++Y G+PQ R+ ++ + ++V +T+Y+ V Sbjct: 498 PHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLV 557 Query: 481 IKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWA 660 ++D + +W+YMI+DE H +KN + Q L ++ A HRLLLTGTPLQN L ELW+ Sbjct: 558 LQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSL-LNFNAEHRLLLTGTPLQNNLVELWS 616 Query: 661 LLNFLLP-------SIFXSWSTFEQW 717 LL FL+P S F + F+ W Sbjct: 617 LLYFLMPAGVTQNNSAFANLKDFQDW 642 >SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizosaccharomyces pombe|chr 1|||Manual Length = 1604 Score = 179 bits (435), Expect = 5e-46 Identities = 83/197 (42%), Positives = 128/197 (64%), Gaps = 8/197 (4%) Frame = +1 Query: 151 LKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLS 330 LKEYQ+KGL WL +L+ +NGILADEMGLGKT+Q+I+++ YL E + GP+L+I P S Sbjct: 842 LKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFLVIAPAS 901 Query: 331 TLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQ--------AQMRSTKFNVLLTTYEYVIK 486 TL NW E ++ P + + Y GS + R++++ ++ F+V++T+Y+ V+ Sbjct: 902 TLHNWQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVL 961 Query: 487 DKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALL 666 D V+W+YMI+DE +K+ + L + +RLLLTGTP+QN + ELWALL Sbjct: 962 DAQYFQSVKWQYMILDEAQAIKSSSSSRWKSL-LAFKCRNRLLLTGTPIQNTMQELWALL 1020 Query: 667 NFLLPSIFXSWSTFEQW 717 +F++PS+F S + F +W Sbjct: 1021 HFIMPSLFDSHNEFSEW 1037 >SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccharomyces pombe|chr 1|||Manual Length = 944 Score = 158 bits (384), Expect = 7e-40 Identities = 91/216 (42%), Positives = 128/216 (59%), Gaps = 4/216 (1%) Frame = +1 Query: 55 DEYKTEEQTYYSIAHTVHESVTEQASILVNG-NLKEYQIKGLEWLVSLFNNNLNGILADE 231 D+ K E+ S +E ++Q S + +G LK YQI GL WL ++ L+GILADE Sbjct: 381 DDKKMEQFLNTSTGSISYEYNSQQPSSIASGITLKSYQIVGLNWLCLMYKAKLSGILADE 440 Query: 232 MGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQS 411 MGLGKT Q I+ + L EK + +L++VP STL NW+ EFEK+ P++ V SY G+ Sbjct: 441 MGLGKTCQVISFLASLKEKG-IQNRHLVVVPSSTLGNWLREFEKFCPSLRVESYSGTQSE 499 Query: 412 RRLVQAQMRSTKFNVLLTTYEYVI---KDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVL 582 R + + T F+VL+TTY+ D+ L K ++ I DEGH +KN + + L Sbjct: 500 RINKRYYLMDTDFDVLVTTYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHL 559 Query: 583 NTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIF 690 + A RLL+TGTPLQN L EL +LL F+LP +F Sbjct: 560 -MNIPANFRLLITGTPLQNNLKELISLLAFMLPKVF 594 >SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosaccharomyces pombe|chr 1|||Manual Length = 922 Score = 155 bits (375), Expect = 8e-39 Identities = 86/196 (43%), Positives = 118/196 (60%), Gaps = 5/196 (2%) Frame = +1 Query: 118 TEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKV 297 T AS + L++YQI G+ WL L+ L GILADEMGLGKT QTIA + LM+ K + Sbjct: 376 TPPASFSPDIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLLMD-KNI 434 Query: 298 NGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRSTK--FNVLLTTY 471 NGP+L+I P ST+ NW+ EF K+ P + + Y GS R ++ ++ S K +NV+LTTY Sbjct: 435 NGPHLVIAPASTMENWLREFAKFCPKLKIELYYGSQVEREEIRERINSNKDSYNVMLTTY 494 Query: 472 EYVIKDKG---VLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNK 642 K L ++ + DEGH +KN + + L + A R+LLTGTPLQN Sbjct: 495 RLAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMS-IPADFRVLLTGTPLQNN 553 Query: 643 LPELWALLNFLLPSIF 690 L EL +LL F+LP +F Sbjct: 554 LKELISLLAFILPHVF 569 >SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccharomyces pombe|chr 3|||Manual Length = 1284 Score = 151 bits (365), Expect = 1e-37 Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 7/201 (3%) Frame = +1 Query: 115 VTEQASILVNG-NLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKK 291 VTEQ L + LK YQ+ G+ WL L+ L+GILADEMGLGKT Q +A L+E+ Sbjct: 537 VTEQPKTLASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLEQG 596 Query: 292 KVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRST--KFNVLLT 465 +GP+L++VP STL NW+ E ++ P++ V Y GS Q R ++ + K+++L+T Sbjct: 597 H-HGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQERANIREAIEENEIKYDILVT 655 Query: 466 TYEYVI---KDKGVLAKVQWKYMIIDEGHRMKNHHC-KLTQVLNTHYIAPHRLLLTGTPL 633 TY+ +D+ L + + DEGH +KN + ++N + A RLLLTGTPL Sbjct: 656 TYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLN--ANFRLLLTGTPL 713 Query: 634 QNKLPELWALLNFLLPSIFXS 696 QN L EL +LL F+LP++F S Sbjct: 714 QNNLKELVSLLAFILPNMFDS 734 >SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1953 Score = 146 bits (353), Expect = 4e-36 Identities = 75/203 (36%), Positives = 122/203 (60%), Gaps = 11/203 (5%) Frame = +1 Query: 139 VNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVT---YLMEK------- 288 ++ +L++YQ +G+ WL L L+GIL D+MGLGKT+QTI +V Y +K Sbjct: 1354 ISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQKLFEESGS 1413 Query: 289 -KKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRSTKFNVLLT 465 K + P LI+ P + +W E +AP + V +Y G P R ++++M+ K +V++T Sbjct: 1414 PKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMK--KSDVVVT 1471 Query: 466 TYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKL 645 +Y+ D L K+ W Y ++DEGH +KN KLT+ + + + HRL+L+GTP+QN + Sbjct: 1472 SYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKS-LRSYHRLILSGTPIQNNV 1530 Query: 646 PELWALLNFLLPSIFXSWSTFEQ 714 ELW+L +FL+P + TF++ Sbjct: 1531 LELWSLFDFLMPGFLGTEKTFQE 1553 >SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1418 Score = 138 bits (334), Expect = 8e-34 Identities = 79/193 (40%), Positives = 113/193 (58%), Gaps = 7/193 (3%) Frame = +1 Query: 124 QASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNG 303 Q S + G L YQ+KGL WL + + ILADEMGLGKT+Q I+ ++ L + K Sbjct: 547 QPSFIKGGTLMPYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKC-F 605 Query: 304 PYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLV-------QAQMRSTKFNVLL 462 P L+IVP +T++NW E +KWAP + + GS ++R LV Q + +VL+ Sbjct: 606 PVLVIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLV 665 Query: 463 TTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNK 642 + V ++ +L K QWK +I+DEG R+KN L L++ + +LLLTGTPLQN Sbjct: 666 ISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSS-VKSDFKLLLTGTPLQNN 724 Query: 643 LPELWALLNFLLP 681 + EL+ LL FL P Sbjct: 725 VRELFNLLQFLNP 737 >SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces pombe|chr 3|||Manual Length = 973 Score = 72.5 bits (170), Expect(2) = 7e-26 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 6/146 (4%) Frame = +1 Query: 22 RDMIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLK----EYQIKGLEWLV 189 RD ++ D + E + + + H + T + + G+++ YQ+ ++WL Sbjct: 230 RDQASASENNKDRGEFEGKDEWLLPHPSKKGQTFEGGFTIPGDIRPHLFRYQVTCVQWLW 289 Query: 190 SLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEK-W 366 L+ GI+ DEMGLGKTIQ ++ ++ L K P LI+ P + + WV EF W Sbjct: 290 ELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIVCPATLMKQWVNEFHTWW 349 Query: 367 AP-TVSVVSYXGSPQSRRLVQAQMRS 441 AP V V+ GS Q + Q S Sbjct: 350 APLRVVVLHATGSGQRASREKRQYES 375 Score = 60.5 bits (140), Expect(2) = 7e-26 Identities = 27/90 (30%), Positives = 53/90 (58%) Frame = +1 Query: 442 TKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLT 621 T+ ++L+TTY + ++ +W Y ++DEGH+++N +++ + +R++L+ Sbjct: 411 TRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEIS-ISCKQIRTVNRIILS 469 Query: 622 GTPLQNKLPELWALLNFLLPSIFXSWSTFE 711 GTP+QN L ELW L +F+ P + F+ Sbjct: 470 GTPIQNNLTELWNLFDFVFPGRLGTLPVFQ 499 >SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces pombe|chr 1|||Manual Length = 852 Score = 87.8 bits (208), Expect = 1e-18 Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 19/207 (9%) Frame = +1 Query: 151 LKEYQIKGLEWLVSLFNNNL----NG-ILADEMGLGKTIQTIALV-TYLMEKKKVNGPYL 312 L+ +QI+G+++L + NG I+ADEMGLGKT+Q IAL+ T L + + P + Sbjct: 264 LRPHQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTI 323 Query: 313 ----IIVPLSTLSNWVLEFEKWAPTVSVVSYX--GSPQSRRLVQAQM-------RSTKFN 453 I P S + NW E KW ++ + G + L+ A R Sbjct: 324 EKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMALQQWASVHGRQVTRP 383 Query: 454 VLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPL 633 VL+ +YE + L + ++ DEGHR+KN LT R++L+GTP+ Sbjct: 384 VLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSD-SLTFTALDKLNVQRRVILSGTPI 442 Query: 634 QNKLPELWALLNFLLPSIFXSWSTFEQ 714 QN L E ++LLNF P + S F + Sbjct: 443 QNDLSEYFSLLNFANPGLLGSRQEFRK 469 >SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 87.4 bits (207), Expect = 2e-18 Identities = 61/191 (31%), Positives = 101/191 (52%), Gaps = 15/191 (7%) Frame = +1 Query: 148 NLKEYQIKGLEWLVSLFNNNLNG-ILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVP 324 NL +Q +G+ WL +++ G ILADEMG+GKTIQTIAL+ L E + P L++ P Sbjct: 356 NLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALL--LSEPR--GKPTLVVAP 411 Query: 325 LSTLSNWVLEFEKWA-PTVSVVSYXGSPQS---RRLVQAQMRSTKFNVLLTTYEY----- 477 + + W E + +S Y G + L + T +NV+ + Y Sbjct: 412 VVAIMQWKEEIDTHTNKALSTYLYYGQARDISGEELSSYDVVLTSYNVIESVYRKERSGF 471 Query: 478 -----VIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNK 642 V+K+K +L ++++ +I+DE H +K+ C + + ++ L+GTPLQN+ Sbjct: 472 RRKNGVVKEKSLLHQMEFYRIILDEAHGIKSRTCNTARAV-CGLRTTRKICLSGTPLQNR 530 Query: 643 LPELWALLNFL 675 + EL++LL FL Sbjct: 531 IGELFSLLRFL 541 >SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1040 Score = 87.0 bits (206), Expect = 3e-18 Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 25/249 (10%) Frame = +1 Query: 43 KVEDDEYKTEEQTYYSIAHTV--HESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNG 216 KV+DD+ + E+ + + + ++ E + L E+Q +GL WL L ++ G Sbjct: 352 KVQDDQQQQLEELFKDLDEQLVNDPTIREGTPAGLIPTLMEHQKEGLMWLKRLEESSKKG 411 Query: 217 -ILADEMGLGKTIQTIAL-VTYLMEKKKVNGPYLIIVPLSTLSNWVLEF-EKWAPT--VS 381 ILAD+MGLGKT+Q +AL VT E K V LII P+S L W E K AP+ + Sbjct: 412 GILADDMGLGKTVQALALLVTRPPESKSVKTT-LIITPVSLLQQWHNEILTKIAPSHRPT 470 Query: 382 VVSYXGSPQSRRLVQAQMRS----TKFNVLL------TTYEYVIKDKGVLAK-------- 507 V + GS + ++ + M T +NV+ Y+ I+D + K Sbjct: 471 VYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLPFFE 530 Query: 508 VQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSI 687 +W +I+DE +KN + + + +R L+GTP+QN + E ++L+ FL Sbjct: 531 AEWYRVILDEAQTIKNRNTLAARGCCL-LESTYRWCLSGTPMQNGVEEFYSLIKFLRIKP 589 Query: 688 FXSWSTFEQ 714 + WS+F + Sbjct: 590 YSDWSSFSK 598 >SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54|Schizosaccharomyces pombe|chr 1|||Manual Length = 811 Score = 84.2 bits (199), Expect = 2e-17 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 7/174 (4%) Frame = +1 Query: 211 NGILADEMGLGKTIQTIALV------TYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAP 372 + ILADEMGLGKT+QTI +V +Y + +++ P++ L NW EF W Sbjct: 230 SAILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVAPVTLLKNWENEFYNWLG 289 Query: 373 TVSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYVIKD-KGVLAKVQWKYMIIDEGHRM 549 + Y + Q + +++++T YE V + + +I DE HR+ Sbjct: 290 HERIHVYIA--RCAEDFQEFTSNKTYSIIITGYETVCTYLRNYGCGIDIDLLICDEAHRL 347 Query: 550 KNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFE 711 K+ + LN RLLLTGTPLQN L E ++++NF++P + ++F+ Sbjct: 348 KSMSSQTWITLNK-LKTRKRLLLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFK 400 >SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 897 Score = 83.4 bits (197), Expect = 3e-17 Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 21/217 (9%) Frame = +1 Query: 121 EQASILVNGNLKEYQIKGLEWLVSLFNNN-LNGILADEMGLGKTIQTIALVTYLMEKKKV 297 + A +LV+ L +Q++G W+ S+ ++ G++AD+MGLGKTIQTIAL+ + + Sbjct: 242 QSAGLLVS--LLPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALLLTQKSQDPL 299 Query: 298 NGPYLIIVPLSTLSNWVLEFE-KWAPTVSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYE 474 LI+V ++ L W E K P+ + Y +++ + + S +++V+LTTY Sbjct: 300 RKTNLIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELS-QYDVVLTTYS 358 Query: 475 ---YVIKDKGV----------------LAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYI 597 Y +K L + W +++DE H ++N L Sbjct: 359 MLAYEMKQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRD-TLAAKCCVKLD 417 Query: 598 APHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTF 708 A +R L+GTP+QN + E ++LL FL + WS F Sbjct: 418 AKYRWCLSGTPIQNHIDEFYSLLKFLRIKPYCVWSLF 454 >SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharomyces pombe|chr 2|||Manual Length = 830 Score = 80.6 bits (190), Expect = 2e-16 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 31/236 (13%) Frame = +1 Query: 109 ESVTEQASILVNGNLK--EYQIKGLEWLVSLF----NNNLNGILADEMGLGKTIQTIALV 270 +S+ Q+S + +++ ++Q++GL WL S ++ GILAD+MGLGKTIQ IAL+ Sbjct: 217 DSMQRQSSFIPGMHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALI 276 Query: 271 -TYLMEKKKVN-GPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRST 444 ++ + KKK + L++ PLS + W E + + ++V Y G+ + + L Sbjct: 277 LSHPLPKKKHSIKSTLVVAPLSLIKQWESEVQTKSKLTAIV-YHGASRYKLLKVIH---- 331 Query: 445 KFNVLLTTYEYVI-----------------------KDKGVLAKVQWKYMIIDEGHRMKN 555 +++V++TTY+ ++ K K L W +I+DE H +KN Sbjct: 332 EYDVVITTYQILVSEWVSHNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILDEAHTIKN 391 Query: 556 HHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVN 723 K + + +R LTGTPLQN + EL++L+ FL + F S ++ ++ Sbjct: 392 KSSK-SALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQIS 446 >SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1133 Score = 68.5 bits (160), Expect = 9e-13 Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 25/193 (12%) Frame = +1 Query: 214 GILADEMGLGKTIQTIALV-----------TYLMEKKKVNGPY-----LIIVPLSTLSNW 345 GILADEMGLGKTI+ ++L+ K + P L++ P+S L W Sbjct: 525 GILADEMGLGKTIEVLSLIHSRPCFSTDEIPEAFRHSKPSLPVASRTTLVVAPMSLLDQW 584 Query: 346 VLEFEKWAPTVSVVS--YXGSPQSRRLVQAQM-RSTKFNVLLTTYEYVIKD------KGV 498 E K + S Y GS + L + ST +++T+Y ++ + Sbjct: 585 HSEACKVSQGTKFRSMIYYGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFSQQSHSSG 644 Query: 499 LAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLL 678 L V W +++DEGH ++N K + ++ + +R ++TGTP+ NKL +L++L+ F+ Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHS-ISSQNRWVITGTPIVNKLDDLYSLIKFMR 703 Query: 679 PSIFXSWSTFEQW 717 + W + W Sbjct: 704 ---YEPWCNYTYW 713 >SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1375 Score = 45.2 bits (102), Expect = 1e-05 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 37/192 (19%) Frame = +1 Query: 214 GILADEMGLGKTIQTIALVTY----------------LMEKKKVNGPYLIIVPLSTLSNW 345 GILADEMG+GKT++ + LV + + + K + LII P + L W Sbjct: 286 GILADEMGMGKTLEVLGLVLHHQLPISLTDTCTFDQVVGKNVKYSKATLIITPSTILDQW 345 Query: 346 VLEFEKWAPTVSVVSYXGSPQSRRLVQAQM-----------RSTKFNVLLT-----TYEY 477 + E + P++ V Y G +S L A++ +F +L T T + Sbjct: 346 LSEIDLHVPSLKVFHYQGIRKSNGLKSAKIFLDCDIVVTSYSDLRFELLYTESHSRTLRH 405 Query: 478 V---IKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAP--HRLLLTGTPLQNK 642 + K L V W + +DE ++ + Q++ Y P + ++GTP++++ Sbjct: 406 EKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQMI---YRIPRVNCWTVSGTPVRSE 462 Query: 643 LPELWALLNFLL 678 + +L+ LL FLL Sbjct: 463 VDDLFGLL-FLL 473 >SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 470 Score = 31.9 bits (69), Expect = 0.10 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 4/163 (2%) Frame = +1 Query: 16 KARDMIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSL 195 K + + + +D+E E+ A + +S + +AS+ + + K Y K + +V Sbjct: 104 KIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKADTSRKAYD-KEFKKVVEA 162 Query: 196 FNNNLNGILA-DEMGL-GKTIQTIALVTYLMEKKKVNGPYLI-IVPLSTLSNWVLEFEKW 366 + L + A D G K ++ L + EK+ + I +VP L+ WV + Sbjct: 163 SDVILYVLDARDPEGTRSKDVERQVLASSAEEKRLIFVINKIDLVPSEVLNKWVTYLRNF 222 Query: 367 APTVSVVSYXGSPQSRRLVQ-AQMRSTKFNVLLTTYEYVIKDK 492 PT+ + S GS S Q A ST N+L + Y K K Sbjct: 223 FPTIPMRSASGSGNSNLKHQSASASSTISNLLKSLKSYSAKKK 265 >SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ubp21|Schizosaccharomyces pombe|chr 2|||Manual Length = 1129 Score = 28.7 bits (61), Expect = 0.94 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 322 PLSTLSNWVLEFEKWAPTVSVVSY 393 P+S+LS W+ E KW+ V + Y Sbjct: 742 PISSLSEWIREHLKWSSDVPITYY 765 >SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 845 Score = 28.3 bits (60), Expect = 1.2 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +2 Query: 338 QTGYWSSRSGLPQFRSFPTXALRSRVAWCKLRCDPPSSMCCSLPTSTSSRIREFSP 505 +T +WS PQF +F ALR R+ + K + P + CSL + + E +P Sbjct: 286 ETYHWSPFP--PQFSTFNDNALRLRI-YYKPKSWLPKNSSCSLSVDVKATLLETTP 338 >SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2|||Manual Length = 307 Score = 27.9 bits (59), Expect = 1.6 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -1 Query: 390 GNDRNCGSPLLELQYPV*KSTQRYDN*IRSIHFLLFHEVGDQCNSLNGLTQAHLVG 223 G + G ++ +P K +D+ F ++ EV C+SLN + HLVG Sbjct: 63 GTPKEEGLHFIQHDWPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVG 118 >SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 2386 Score = 27.9 bits (59), Expect = 1.6 Identities = 12/46 (26%), Positives = 25/46 (54%) Frame = +1 Query: 91 IAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILAD 228 + H E+ + +++V+ + + + E L FNN++ GILA+ Sbjct: 831 VPHEKIENALRKVAMIVSQVVNDEDLSNKELLYDFFNNHILGILAE 876 >SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr 3|||Manual Length = 625 Score = 27.5 bits (58), Expect = 2.2 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Frame = +3 Query: 360 EVGSHSFGRFLQXLSAVASPGAS------SDAIHQVQCAAHYLRVRHQG*GSSRQGTMEV 521 E SFG FL ++ +S AS S ++ V ++ + SSR G+ Sbjct: 487 EASLTSFGNFLGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRSGSSSS 546 Query: 522 HDN*RRSSDEKSSLQTNTSTKHSLH 596 + S+ S T TST S+H Sbjct: 547 SSSRSGSTSSSGSSHTITSTSQSVH 571 >SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 26.6 bits (56), Expect = 3.8 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +2 Query: 350 WSSRSGLPQFRSFPTXALRSRVAWC 424 W +RS +P+F A VAWC Sbjct: 331 WDARSSIPKFTKTNHNAAVKAVAWC 355 >SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin Etp1/ cytochrome oxidase cofactor Cox15, fusion|Schizosaccharomyces pombe|chr 1|||Manual Length = 631 Score = 26.2 bits (55), Expect = 5.0 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = +2 Query: 380 RSFPTXALRSRVAWCKLRCDPPSSMCCSLPTSTSSRIREFSPRYN 514 R P AL++ +W KL PP S S + + F P ++ Sbjct: 463 RLHPEYALKNIRSWTKLISSPPKSSISSSILTQQRQFHTFRPSFH 507 >SPCC622.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 132 Score = 25.8 bits (54), Expect = 6.6 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -1 Query: 78 LFLSFIFIVLDFGLFNHISRFIFVGF 1 LF+SFI ++ LF + FIF GF Sbjct: 43 LFMSFISFIVSCRLFILVFTFIFKGF 68 >SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||Manual Length = 201 Score = 25.4 bits (53), Expect = 8.7 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 Query: 22 RDMIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASI 135 R +KK ED+E + E++ YY +V E ++I Sbjct: 153 RPNLKKRTEEDEENEEEDEEYYRFLQFYIMTVPENSTI 190 >SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 25.4 bits (53), Expect = 8.7 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -2 Query: 725 ALTHCSKVDQLLNIDGNRKFSSAQSSGSLFCSGVPVRSRR 606 +LT+ S+ NRK +G+L C + VRS + Sbjct: 6 SLTYLSQASSCNGATDNRKLVILDLNGTLLCRALAVRSEK 45 >SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosaccharomyces pombe|chr 2|||Manual Length = 933 Score = 25.4 bits (53), Expect = 8.7 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -3 Query: 598 RCSECLVLVLVCSDDFSSDDLRQLSC 521 +C C + S+DFS DD +Q+ C Sbjct: 50 KCVNCNKKLDPSSEDFSQDDQKQIFC 75 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.317 0.133 0.395 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,177,486 Number of Sequences: 5004 Number of extensions: 67893 Number of successful extensions: 249 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 206 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 217 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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