Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0468
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 277 6e-75
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 277 6e-75
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 277 8e-75
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 276 1e-74
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 242 2e-64
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 239 2e-63
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 220 7e-58
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 220 9e-58
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 220 9e-58
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 217 9e-57
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 203 1e-52
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 198 2e-51
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 184 6e-47
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 181 4e-46
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 166 1e-41
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 164 6e-41
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 162 3e-40
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 161 5e-40
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 138 3e-33
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 136 2e-32
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 120 1e-27
At5g63950.1 68418.m08030 SNF2 domain-containing protein / helica... 105 4e-23
At1g02670.1 68414.m00217 DNA repair protein, putative similar to... 87 2e-17
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 71 3e-17
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 83 1e-16
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 75 5e-14
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 75 7e-14
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica... 73 2e-13
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 64 1e-10
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 63 2e-10
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 62 4e-10
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 58 5e-09
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 58 8e-09
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 56 2e-08
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 56 3e-08
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 49 3e-06
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 45 6e-05
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 45 6e-05
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 42 3e-04
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 39 0.003
At3g32330.1 68416.m04125 DNA repair protein-related weak similar... 38 0.009
At3g32280.1 68416.m04116 hypothetical protein 34 0.088
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 33 0.27
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 33 0.27
At2g01210.1 68415.m00033 leucine-rich repeat transmembrane prote... 30 1.9
At3g31900.1 68416.m04029 hypothetical protein 29 2.5
At1g73070.1 68414.m08449 leucine-rich repeat family protein cont... 28 7.6
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 277 bits (679), Expect = 6e-75
Identities = 130/231 (56%), Positives = 163/231 (70%), Gaps = 3/231 (1%)
Frame = +1
Query: 61 YKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGL 240
Y + YY +AH++ E++ EQ S LV G L+EYQ+ GL WLVSL+NN+LNGILADEMGL
Sbjct: 724 YLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGL 783
Query: 241 GKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRR- 417
GKT+Q I+L+ YLME K GP+L++VP S L W E WAP++ + Y G+P RR
Sbjct: 784 GKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRK 843
Query: 418 LVQAQMRSTKFNVLLTTYEYVIK--DKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTH 591
L + Q+ KFNVLLTTYEY++ D+ L+K+ W Y+IIDEGHR+KN CKL L H
Sbjct: 844 LFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLK-H 902
Query: 592 YIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTG 744
Y++ HRLLLTGTPLQN L ELWALLNFLLP+IF S F QW N F + G
Sbjct: 903 YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNG 953
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 277 bits (679), Expect = 6e-75
Identities = 130/231 (56%), Positives = 163/231 (70%), Gaps = 3/231 (1%)
Frame = +1
Query: 61 YKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGL 240
Y + YY +AH++ E++ EQ S LV G L+EYQ+ GL WLVSL+NN+LNGILADEMGL
Sbjct: 724 YLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGL 783
Query: 241 GKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRR- 417
GKT+Q I+L+ YLME K GP+L++VP S L W E WAP++ + Y G+P RR
Sbjct: 784 GKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRK 843
Query: 418 LVQAQMRSTKFNVLLTTYEYVIK--DKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTH 591
L + Q+ KFNVLLTTYEY++ D+ L+K+ W Y+IIDEGHR+KN CKL L H
Sbjct: 844 LFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLK-H 902
Query: 592 YIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTG 744
Y++ HRLLLTGTPLQN L ELWALLNFLLP+IF S F QW N F + G
Sbjct: 903 YVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNG 953
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar to
SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 277 bits (678), Expect = 8e-75
Identities = 124/241 (51%), Positives = 168/241 (69%), Gaps = 1/241 (0%)
Frame = +1
Query: 25 DMIKKAKVEDDEYKTEEQTYYSIA-HTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFN 201
++I +D E + +++A H++ E VT+Q S+L G L+ YQ++GL+W+VSL+N
Sbjct: 343 EIIDSDNNDDSNDLLEGERQFNLAIHSIQEKVTKQPSLLQGGELRSYQLEGLQWMVSLYN 402
Query: 202 NNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVS 381
N+ NGILADEMGLGKTIQTIAL+ YL+E K ++GP+LI+ P + L NW EF WAP++S
Sbjct: 403 NDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSIS 462
Query: 382 VVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHH 561
Y GS + R ++A++ KFNVL+T Y+ +++DK L K+ W YMI+DEGHR+KNH
Sbjct: 463 AFLYDGSKEKRTEIRARIAGGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHE 522
Query: 562 CKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATT 741
C L + L T Y RLLLTGTP+QN L ELW+LLNFLLP IF S FE+W N FA
Sbjct: 523 CALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAEC 582
Query: 742 G 744
G
Sbjct: 583 G 583
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar to
SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 276 bits (676), Expect = 1e-74
Identities = 124/225 (55%), Positives = 161/225 (71%), Gaps = 1/225 (0%)
Frame = +1
Query: 73 EQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTI 252
++ Y S H++ E VTEQ S+L G L+ YQ++GL+W+VSLFNNNLNGILADEMGLGKTI
Sbjct: 407 QRQYNSAIHSIQEKVTEQPSLLEGGELRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTI 466
Query: 253 QTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQ 432
QTI+L+ YL+E K V GPYLI+ P + L NWV EF W P+++ Y G + R+ ++ +
Sbjct: 467 QTISLIAYLLENKGVPGPYLIVAPKAVLPNWVNEFATWVPSIAAFLYDGRLEERKAIREK 526
Query: 433 MRST-KFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHR 609
+ KFNVL+T Y+ +++DK L K++W YMI+DEGHR+KNH L + L T Y R
Sbjct: 527 IAGEGKFNVLITHYDLIMRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRR 586
Query: 610 LLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTG 744
LLLTGTP+QN L ELW+LLNFLLP IF S FE+W NA FA G
Sbjct: 587 LLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRG 631
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 242 bits (592), Expect = 2e-64
Identities = 114/221 (51%), Positives = 150/221 (67%)
Frame = +1
Query: 82 YYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTI 261
YY++AH V+E V Q S+L G L++YQ+ GL+W++SL+NN LNGILADEMGLGKT+Q +
Sbjct: 958 YYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1017
Query: 262 ALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRS 441
AL+ YLME K GP+LIIVP + L NW E W P+VS + Y G+ R + +Q++
Sbjct: 1018 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQVKF 1077
Query: 442 TKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLT 621
KFNVL+TTYE+++ D+ L+KV WKY+IIDE RMK+ L + L+ Y RLLLT
Sbjct: 1078 EKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLT 1136
Query: 622 GTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTG 744
GTPLQN L ELW+LLN LLP +F + F W F G
Sbjct: 1137 GTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEG 1177
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 239 bits (584), Expect = 2e-63
Identities = 114/222 (51%), Positives = 150/222 (67%), Gaps = 1/222 (0%)
Frame = +1
Query: 82 YYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTI 261
YY++AH V+E V Q S+L G L++YQ+ GL+W++SL+NN LNGILADEMGLGKT+Q +
Sbjct: 958 YYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1017
Query: 262 ALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSR-RLVQAQMR 438
AL+ YLME K GP+LIIVP + L NW E W P+VS + Y G+ R +L ++
Sbjct: 1018 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVC 1077
Query: 439 STKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLL 618
+ KFNVL+TTYE+++ D+ L+KV WKY+IIDE RMK+ L + L+ Y RLLL
Sbjct: 1078 AMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1136
Query: 619 TGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTG 744
TGTPLQN L ELW+LLN LLP +F + F W F G
Sbjct: 1137 TGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEG 1178
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 220 bits (538), Expect = 7e-58
Identities = 100/224 (44%), Positives = 153/224 (68%), Gaps = 1/224 (0%)
Frame = +1
Query: 49 EDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILAD 228
ED+EY EE+ + + + + Q S + G +++YQ+ GL WL+ L+ N +NGILAD
Sbjct: 158 EDEEYLKEEED--GLTGSGNTRLLTQPSC-IQGKMRDYQLAGLNWLIRLYENGINGILAD 214
Query: 229 EMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQ 408
EMGLGKT+QTI+L+ YL E + +NGP++++ P STL NW+ E ++ P + V + G+P+
Sbjct: 215 EMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPE 274
Query: 409 SRRLVQAQMR-STKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLN 585
RR ++ + + KF++ +T++E IK+K L + W+Y+IIDE HR+KN + L++ +
Sbjct: 275 ERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMR 334
Query: 586 THYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQW 717
+ +RLL+TGTPLQN L ELWALLNFLLP IF S TF++W
Sbjct: 335 L-FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEW 377
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 220 bits (537), Expect = 9e-58
Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Frame = +1
Query: 1 KTDEYKARDMIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLE 180
K + + R K + E+DE +E+ + +T+ A I G L++YQ+ GL
Sbjct: 146 KKGKGRGRHSSKLTEEEEDEECLKEEEGGIVGSGGTRLLTQPACI--QGKLRDYQLAGLN 203
Query: 181 WLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFE 360
WL+ L+ N +NGILADEMGLGKT+QTI+L+ YL E + +NGP++++ P STL NW+ E
Sbjct: 204 WLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIR 263
Query: 361 KWAPTVSVVSYXGSPQSRRLVQAQMR-STKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDE 537
++ P + V + G+P+ RR ++ ++ + KF++ +T++E IK+K L + W+Y+IIDE
Sbjct: 264 RFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDE 323
Query: 538 GHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQW 717
HR+KN + L++ + + +RLL+TGTPLQN L ELWALLNFLLP +F S TF++W
Sbjct: 324 AHRIKNENSLLSKTMRL-FSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEW 382
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 220 bits (537), Expect = 9e-58
Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Frame = +1
Query: 1 KTDEYKARDMIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLE 180
K + + R K + E+DE +E+ + +T+ A I G L++YQ+ GL
Sbjct: 146 KKGKGRGRHSSKLTEEEEDEECLKEEEGGIVGSGGTRLLTQPACI--QGKLRDYQLAGLN 203
Query: 181 WLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFE 360
WL+ L+ N +NGILADEMGLGKT+QTI+L+ YL E + +NGP++++ P STL NW+ E
Sbjct: 204 WLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIR 263
Query: 361 KWAPTVSVVSYXGSPQSRRLVQAQMR-STKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDE 537
++ P + V + G+P+ RR ++ ++ + KF++ +T++E IK+K L + W+Y+IIDE
Sbjct: 264 RFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDE 323
Query: 538 GHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQW 717
HR+KN + L++ + + +RLL+TGTPLQN L ELWALLNFLLP +F S TF++W
Sbjct: 324 AHRIKNENSLLSKTMRL-FSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEW 382
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 217 bits (529), Expect = 9e-57
Identities = 113/235 (48%), Positives = 152/235 (64%), Gaps = 5/235 (2%)
Frame = +1
Query: 28 MIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNN 207
MI ++K ED E + T TV + E +L G LK YQ+KG++WL+SL+ N
Sbjct: 165 MISRSK-EDGETINSDLTE---EETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNG 220
Query: 208 LNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVV 387
LNGILAD+MGLGKTIQTI +++L + ++GPYL+I PLSTLSNW E ++ P+++ +
Sbjct: 221 LNGILADQMGLGKTIQTIGFLSHL-KGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAI 279
Query: 388 SYXGSPQSR-RLVQAQMRST---KFNVLLTTYEYVIKD-KGVLAKVQWKYMIIDEGHRMK 552
Y G R L + M T KF +++T+YE + D K +L WKY++IDEGHR+K
Sbjct: 280 IYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLK 339
Query: 553 NHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQW 717
NH CKL + L H ++LLLTGTPLQN L ELW+LLNF+LP IF S FE W
Sbjct: 340 NHKCKLLRELK-HLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESW 393
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 203 bits (495), Expect = 1e-52
Identities = 103/240 (42%), Positives = 153/240 (63%), Gaps = 6/240 (2%)
Frame = +1
Query: 7 DEYKARDMIKKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWL 186
DEYKAR++ + E+Q A + EQ L+ G L++YQ++GL +L
Sbjct: 583 DEYKAREV----SIAVQGKMVEQQRTKGKASL--RKLDEQPEWLIGGTLRDYQLEGLNFL 636
Query: 187 VSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKW 366
V+ + N+ N ILADEMGLGKT+Q+++++ +L +++ GP+L++VPLSTL+NW EF KW
Sbjct: 637 VNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKW 696
Query: 367 APTVSVVSYXGSPQSRRL------VQAQMRSTKFNVLLTTYEYVIKDKGVLAKVQWKYMI 528
P ++++ Y G+ SR + V R KFN LLTTYE V+KDK VL+K++W Y++
Sbjct: 697 LPGMNIIVYVGTRASREVRNKTNDVHKVGRPIKFNALLTTYEVVLKDKAVLSKIKWIYLM 756
Query: 529 IDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTF 708
+DE HR+KN +L L + ++LL+TGTPLQN + ELWALL+FL P F + F
Sbjct: 757 VDEAHRLKNSEAQLYTAL-LEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEF 815
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 198 bits (484), Expect = 2e-51
Identities = 94/202 (46%), Positives = 134/202 (66%), Gaps = 1/202 (0%)
Frame = +1
Query: 115 VTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKK 294
V + L+ +L+EYQ GL+WLV+++ LNGILADEMGLGKTI TIAL+ +L K
Sbjct: 524 VRTKLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKG 583
Query: 295 VNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLV-QAQMRSTKFNVLLTTY 471
+ GP+LI+VP S + NW EF KW P +++Y GS + R+L Q M+ F+V +TTY
Sbjct: 584 IWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWMKLNSFHVCITTY 643
Query: 472 EYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPE 651
VI+D + + +WKY+I+DE H +KN + Q L ++ + R+LLTGTPLQN L E
Sbjct: 644 RLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTL-LNFNSKRRILLTGTPLQNDLME 702
Query: 652 LWALLNFLLPSIFXSWSTFEQW 717
LW+L++FL+P +F S F+ W
Sbjct: 703 LWSLMHFLMPHVFQSHQEFKDW 724
>At3g57300.1 68416.m06378 transcriptional activator, putative similar
to transcriptional activator SRCAP [Homo sapiens]
GI:5106572; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1507
Score = 184 bits (448), Expect = 6e-47
Identities = 85/213 (39%), Positives = 134/213 (62%), Gaps = 7/213 (3%)
Frame = +1
Query: 100 TVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYL 279
T+ + T Q L G LKEYQ+KGL+WLV+ + LNGILADEMGLGKTIQ +A + +L
Sbjct: 569 TMPVTSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHL 628
Query: 280 MEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQM-------R 438
E+K + GP+L++ P S L+NW E ++ P + + Y G Q R +++ + R
Sbjct: 629 AEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRR 688
Query: 439 STKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLL 618
F++L+T+Y+ ++ D+ +V+W+YM++DE +K+ + L + +RLLL
Sbjct: 689 DAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTL-LSFNCRNRLLL 747
Query: 619 TGTPLQNKLPELWALLNFLLPSIFXSWSTFEQW 717
TGTP+QN + ELWALL+F++P +F + F +W
Sbjct: 748 TGTPIQNNMAELWALLHFIMPMLFDNHDQFNEW 780
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 181 bits (441), Expect = 4e-46
Identities = 97/214 (45%), Positives = 134/214 (62%), Gaps = 13/214 (6%)
Frame = +1
Query: 112 SVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKK 291
++TEQ L G L +Q++ L WL ++ + N ILADEMGLGKT+ A ++ L +
Sbjct: 662 TLTEQPQELRGGALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEF 721
Query: 292 KVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQ-------------AQ 432
V P L++VPLST+ NW+ EF WAP ++VV Y GS + R +++ +
Sbjct: 722 GVARPCLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKK 781
Query: 433 MRSTKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRL 612
S KFNVLLTTYE V+ D L V W+ +++DEGHR+KN KL +LNT + HR+
Sbjct: 782 PTSYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNT-FSFQHRV 840
Query: 613 LLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQ 714
LLTGTPLQN + E++ LLNFL PS F S S+FE+
Sbjct: 841 LLTGTPLQNNIGEMYNLLNFLQPSSFPSLSSFEE 874
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 166 bits (404), Expect = 1e-41
Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 6/197 (3%)
Frame = +1
Query: 139 VNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLII 318
+ G L YQ++GL +L ++ N ILADEMGLGKTIQ+IA + L E+ P+L++
Sbjct: 221 LTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEENL--SPHLVV 278
Query: 319 VPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQ------AQMRSTKFNVLLTTYEYV 480
PLST+ NW EF WAP ++VV Y G ++R ++ ++ R +KF+VLLTTYE V
Sbjct: 279 APLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMV 338
Query: 481 IKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWA 660
VL+ ++W MIIDEGHR+KN KL L + + + H +LLTGTPLQN L EL+A
Sbjct: 339 HPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSL-SQFTSKHIVLLTGTPLQNNLNELFA 397
Query: 661 LLNFLLPSIFXSWSTFE 711
L++FL F S F+
Sbjct: 398 LMHFLDADKFGSLEKFQ 414
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 164 bits (398), Expect = 6e-41
Identities = 81/207 (39%), Positives = 128/207 (61%), Gaps = 5/207 (2%)
Frame = +1
Query: 139 VNGNLKEYQIKGLEWLVSLFNNNLNGILA-DEMGLGKTIQTIALVTYLMEKKKVNGPYLI 315
V LK +Q++G+ WL+ + +N +L D+MGLGKT+Q I+ ++YL ++ + GP+L+
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLV 106
Query: 316 IVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRS----TKFNVLLTTYEYVI 483
+ PLS WV E ++ P + V+ Y G R ++ M F+VLLTTY+ +
Sbjct: 107 LCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHGHFLPFDVLLTTYDIAL 166
Query: 484 KDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWAL 663
D+ L+++ W+Y IIDE R+KN + L VL ++ P RLL+TGTP+QN L ELWAL
Sbjct: 167 VDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWAL 226
Query: 664 LNFLLPSIFXSWSTFEQWVNAXFATTG 744
++F +P +F T +Q+++A F TG
Sbjct: 227 MHFCMPLVF---GTLDQFLSA-FKETG 249
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 162 bits (393), Expect = 3e-40
Identities = 83/213 (38%), Positives = 132/213 (61%), Gaps = 11/213 (5%)
Frame = +1
Query: 139 VNGNLKEYQIKGLEWLVSLFNNNLNGILA-DEMGLGKTIQTIALVTYLMEKKKVNGPYLI 315
V LK +Q++G+ WL+ + +N +L D+MGLGKT+Q I+ ++YL ++ + GP+L+
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLV 106
Query: 316 IVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQM-----RSTK-----FNVLLT 465
+ PLS WV E ++ P + V+ Y G R ++ M +S+K F+VLLT
Sbjct: 107 LCPLSVTDGWVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLT 166
Query: 466 TYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKL 645
TY+ + D+ L+++ W+Y IIDE R+KN + L VL ++ P RLL+TGTP+QN L
Sbjct: 167 TYDIALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNL 226
Query: 646 PELWALLNFLLPSIFXSWSTFEQWVNAXFATTG 744
ELWAL++F +P +F T +Q+++A F TG
Sbjct: 227 TELWALMHFCMPLVF---GTLDQFLSA-FKETG 255
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 161 bits (391), Expect = 5e-40
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 24/216 (11%)
Frame = +1
Query: 139 VNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLII 318
+ G L YQ++GL +L ++ + ILADEMGLGKTIQ+IAL+ L E+ + P+L+I
Sbjct: 269 LKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLI--PHLVI 326
Query: 319 VPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLV------------------------Q 426
PLSTL NW EF WAP ++VV Y G+ Q+R ++ +
Sbjct: 327 APLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSE 386
Query: 427 AQMRSTKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPH 606
++ + KF+VLLT+YE + D VL ++W+ MI+DEGHR+KN KL L T Y + H
Sbjct: 387 SKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSL-TQYSSNH 445
Query: 607 RLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQ 714
R+LLTGTPLQN L EL+ L++FL F S F++
Sbjct: 446 RILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQE 481
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 138 bits (335), Expect = 3e-33
Identities = 79/194 (40%), Positives = 112/194 (57%), Gaps = 14/194 (7%)
Frame = +1
Query: 151 LKEYQIKGLEWLVSLFNNNLNG-ILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPL 327
LK YQ+ G+ +L+ L+ + G ILADEMGLGKTIQ I +T L GP+L++ P
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPA 272
Query: 328 STLSNWVLEFEKWAPTVSVVSYXGSPQ---SRRL--VQAQMRSTKFNVLLTTY------- 471
S L NW E KW P+ +V+ Y G+ + SR L + + FNVLL Y
Sbjct: 273 SVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLVCYSLFERHS 332
Query: 472 EYVIKDKGVLAKVQWKYMIIDEGHRMKNHHC-KLTQVLNTHYIAPHRLLLTGTPLQNKLP 648
E D+ VL + +W +++DE H +K+ + + +++ A RL+LTGTPLQN L
Sbjct: 333 EQQKDDRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLH 392
Query: 649 ELWALLNFLLPSIF 690
ELW+LL F+LP IF
Sbjct: 393 ELWSLLEFMLPDIF 406
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 136 bits (328), Expect = 2e-32
Identities = 73/195 (37%), Positives = 113/195 (57%), Gaps = 8/195 (4%)
Frame = +1
Query: 151 LKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNG------PYL 312
L+ YQ +G+ WL L L+GIL D+MGLGKT+Q A+V +++ + P +
Sbjct: 1444 LRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGSTDELDVFPSI 1503
Query: 313 IIVPLSTLSNWVLEFEKWAPT--VSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYVIK 486
I+ P + + +W E EK+ +SV+ Y GS Q R ++ Q + NV++T+Y+ V K
Sbjct: 1504 IVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNN--HNVIITSYDVVRK 1561
Query: 487 DKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALL 666
D L + W Y I+DEGH +KN K+T + A HRL+L+GTP+QN + ELW+L
Sbjct: 1562 DVDYLTQFSWNYCILDEGHIIKNAKSKITAAVK-QLKAQHRLILSGTPIQNNIMELWSLF 1620
Query: 667 NFLLPSIFXSWSTFE 711
+FL+P + F+
Sbjct: 1621 DFLMPGFLGTERQFQ 1635
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 120 bits (288), Expect = 1e-27
Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Frame = +1
Query: 139 VNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEK---------- 288
+N L E+Q +G++++ +L+ NN GIL D+MGLGKTIQTIA + + K
Sbjct: 135 INCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLL 194
Query: 289 KKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRSTKFNVLLTT 468
+ GP LII P S + NW EF +WA V Y GS +R ++ ++++ VL+T+
Sbjct: 195 ESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGS--NRDMILEKLKARGVEVLVTS 252
Query: 469 YEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLP 648
++ VL+ + W+ +I DE HR+KN KL + R+ LTGT +QNK+
Sbjct: 253 FDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEAC-LEIKTKKRIGLTGTVMQNKIS 311
Query: 649 ELWALLNFLLP 681
EL+ L ++ P
Sbjct: 312 ELFNLFEWVAP 322
>At5g63950.1 68418.m08030 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1090
Score = 105 bits (251), Expect = 4e-23
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Frame = +1
Query: 151 LKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLS 330
L +Q +GL WL SL GIL D+MGLGKT+Q + + L K + L++ P +
Sbjct: 377 LYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRA-LVVAPKT 435
Query: 331 TLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYVIKDKGVLAKV 510
L +W+ E + Y G+ R +LLTTY+ V + L
Sbjct: 436 LLPHWMKELATVGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVRNNTKALQGD 495
Query: 511 ------------QWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPEL 654
+W YMI+DEGH +KN + + + L + HR++++GTP+QN L EL
Sbjct: 496 DHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSL-LEIPSSHRIIISGTPIQNNLKEL 554
Query: 655 WALLNFLLPSIFXSWSTFEQ 714
WAL NF P + + F+Q
Sbjct: 555 WALFNFSCPGLLGDKNWFKQ 574
>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 678
Score = 86.6 bits (205), Expect = 2e-17
Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 18/239 (7%)
Frame = +1
Query: 34 KKAKVEDDEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWL-VSLFNNNL 210
+K ++ ++ + E + + V EQ L+ LK YQ + L W + +
Sbjct: 96 RKWQIMKEKVQMTEDDDFDEQNAVIAEAAEQPLDLIIPLLK-YQKEFLAWATIQELSAVR 154
Query: 211 NGILADEMGLGKTIQTIALVTYLME-----KKKVNGPYLIIVPLSTLSNWVLEFEKWAP- 372
GILADEMG+GKTIQ I+LV E ++ G L++VP LS W+ E +
Sbjct: 155 GGILADEMGMGKTIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSP 214
Query: 373 -TVSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYV----IKDKGV------LAKVQWK 519
+ V+ Y G P+ + VQ M ++ +LTT V KD+GV L ++W
Sbjct: 215 GSTRVLQYHG-PKRDKNVQKLM---NYDFVLTTSPIVENEYRKDEGVDETMSPLHSIKWN 270
Query: 520 YMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXS 696
+I+DE H +KN + + + A +R L+GTPLQN + EL++L+++ + F S
Sbjct: 271 RIIVDEAHDIKNRSSRTAKAVFA-LEATYRWALSGTPLQNDVDELYSLVSYSFLNFFYS 328
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 70.9 bits (166), Expect(2) = 3e-17
Identities = 45/153 (29%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Frame = +1
Query: 292 KVNGPYLIIVPLSTLSNWVLEFEKWAP--TVSVVSYXGSPQS---RRLVQAQMRSTKFNV 456
K G LII P++ LS W E E + TVSV+ Y G ++ + + + T + V
Sbjct: 738 KAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGV 797
Query: 457 LLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPH-RLLLTGTPL 633
L + Y+ + + + ++ W +++DE H +K+ + + T ++ H R LTGTPL
Sbjct: 798 LTSAYKQDMANS-IFHRIDWYRIVLDEAHTIKSWKTQAAKA--TFELSSHCRWCLTGTPL 854
Query: 634 QNKLPELWALLNFLLPSIFXSWSTFEQWVNAXF 732
QNKL +L++LL FL + +W+ + + + +
Sbjct: 855 QNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPY 887
Score = 35.1 bits (77), Expect(2) = 3e-17
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +1
Query: 214 GILADEMGLGKTIQTIALV 270
GILAD MGLGKT+ TIAL+
Sbjct: 683 GILADAMGLGKTVMTIALI 701
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 83.4 bits (197), Expect = 1e-16
Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 15/214 (7%)
Frame = +1
Query: 130 SILVNGNLKEYQIKGLEWLVSLFNN-----NLNG-ILADEMGLGKTIQTIALVTYLMEKK 291
S+LV L+ +Q +G++++ + N+NG ILAD+MGLGKT+Q+I L+ L+ +
Sbjct: 70 SVLVKF-LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQG 128
Query: 292 KVNGPY----LIIVPLSTLSNWVLEFEKWA-PTVSVVSYXGSPQSRRL--VQAQMRS-TK 447
P +I+ P S +SNW E +KW + +++ S + L + + R +
Sbjct: 129 FDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSA 188
Query: 448 FNVLLTTYE-YVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTG 624
VL+ +YE + + +I DE HR+KN + L + R+LL+G
Sbjct: 189 LQVLIISYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALAS-LTCKRRVLLSG 247
Query: 625 TPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNA 726
TP+QN L E +A++NF P + F + A
Sbjct: 248 TPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEA 281
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 74.9 bits (176), Expect = 5e-14
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 9/161 (5%)
Frame = +1
Query: 277 LMEKKKV--NGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRR-----LVQAQM 435
L+E+K V NG LI+ P++ L W E E A S+ Y QSR L Q+ +
Sbjct: 480 LLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDV 539
Query: 436 RSTKFNVLLTTY--EYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHR 609
T + VL + + E +G+ A V+W +++DE H +KN +++ + +A R
Sbjct: 540 VITTYGVLTSEFSQENSADHEGIYA-VRWFRIVLDEAHTIKNSKSQIS-LAAAALVADRR 597
Query: 610 LLLTGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXF 732
LTGTP+QN L +L++LL FL + +W+ + + V F
Sbjct: 598 WCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPF 638
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1
Query: 214 GILADEMGLGKTIQTIALV 270
GILAD MGLGKT+ TI+L+
Sbjct: 415 GILADAMGLGKTVMTISLL 433
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/103 (34%), Positives = 58/103 (56%)
Frame = +1
Query: 439 STKFNVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLL 618
+++ +L+TTYE + L ++W Y ++DEGHR++N + +T V HR+++
Sbjct: 514 NSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTV-HRIIM 572
Query: 619 TGTPLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTGG 747
TG P+QNKL ELW+L +F+ P FE + T GG
Sbjct: 573 TGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPI-TVGG 614
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/86 (39%), Positives = 46/86 (53%)
Frame = +1
Query: 151 LKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLS 330
L +YQ G++WL L GI+ DEMGLGKTIQ ++ + L K+ P +II P++
Sbjct: 385 LFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSL-HFSKMYKPSIIICPVT 443
Query: 331 TLSNWVLEFEKWAPTVSVVSYXGSPQ 408
L W E +KW P V S Q
Sbjct: 444 LLRQWRREAQKWYPDFHVEILHDSAQ 469
>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
domain-containing protein contains similarity to
DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
contains PFam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2
Length = 673
Score = 72.9 bits (171), Expect = 2e-13
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 13/197 (6%)
Frame = +1
Query: 139 VNGNLKEYQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALVTYLMEKKKVNGPYLII 318
+ L +Q +G+E+++ + +LADEMGLGKT+Q IA+ T + E + P LII
Sbjct: 168 IEPKLLPFQREGIEFILQ---HGGRVLLADEMGLGKTLQAIAVTTCVQE----SWPVLII 220
Query: 319 VPLSTLSNWVLEFEKW--APTVSVVSYXGSPQSRR-----LVQAQMRST-----KFNVLL 462
P S +W +W P +V P +V + + T FN++
Sbjct: 221 APSSLRLHWATMIHQWLHVPPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDGVFNIV- 279
Query: 463 TTYEYVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQV-LNTHYIAPHRLLLTGTPLQN 639
+Y+ V K +L + +K +I DE H +KN K T L A + +LL+GTP +
Sbjct: 280 -SYDVVTKLDKLLMALDFKVVIADESHFLKNGQAKRTSACLPVIKKAQYAILLSGTPALS 338
Query: 640 KLPELWALLNFLLPSIF 690
+ EL+ L L P ++
Sbjct: 339 RPIELFKQLEALYPDVY 355
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary 28614
Length = 1457
Score = 63.7 bits (148), Expect = 1e-10
Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 29/219 (13%)
Frame = +1
Query: 139 VNGNLKEYQIKGLEWL----------VSLFNNNLNGILADEMGLGKTIQTIALVTYLMEK 288
++ LK +Q+ G+ ++ V + L ILA MGLGKT Q IA + M
Sbjct: 683 ISAKLKVHQVTGIRFMWENIIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRC 742
Query: 289 KKVN-GPYLIIVPLSTLSNWVLEFEKWAPT----VSVVSYXGSPQSRRLVQAQMRSTKFN 453
+ LI+ P++ L NW EFEKW P+ + + + RR K
Sbjct: 743 VDLGLKTALIVTPVNVLHNWRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGG 802
Query: 454 VLLTTYEYV--------IKD----KGVLAKVQ--WKYMIIDEGHRMKNHHCKLTQVLNTH 591
V L Y +KD +G+ ++ ++ DE H +KN TQ L
Sbjct: 803 VFLMGYTNFRNLSLGRGVKDLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALK-Q 861
Query: 592 YIAPHRLLLTGTPLQNKLPELWALLNFLLPSIFXSWSTF 708
R+ LTG+PLQN L E + +++F+ S F
Sbjct: 862 VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSPEF 900
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 63.3 bits (147), Expect = 2e-10
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Frame = +1
Query: 208 LNGILADEMGLGKTIQTIALVTYLMEKKKV-----------NGPYLIIVPLSTLSNWVLE 354
L GILAD+ GLGKTI TI+L+ L++K K +G LI+ P S + W E
Sbjct: 75 LGGILADDQGLGKTISTISLI--LLQKLKSQSKQRKRKGQNSGGTLIVCPASVVKQWARE 132
Query: 355 FEKWAPT---VSVVSYXGSPQSRRLVQAQMRSTKF------------NVLLTTYE----- 474
++ +SV+ + GS +++ + + N +L Y+
Sbjct: 133 VKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIVTNEVPQNPMLNRYDSMRGR 192
Query: 475 -------YVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPL 633
+ G L +V+W +++DE H +KNH + + + A R LTGTP+
Sbjct: 193 ESLDGSSLIQPHVGALGRVRWLRVVLDEAHTIKNHRTLIAKACFS-LRAKRRWCLTGTPI 251
Query: 634 QNKLPELWALLNFLLPSIFXSWSTFEQWVNA 726
+NK+ +L++ FL + ++F Q + A
Sbjct: 252 KNKVDDLYSYFRFLRYHPYAMCNSFHQRIKA 282
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 62.1 bits (144), Expect = 4e-10
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 17/214 (7%)
Frame = +1
Query: 151 LKEYQIKGLEWLVS-LFNNNLNG-ILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVP 324
+K +QI+G ++L S L ++ G I+A G GKT I+ + + K P L+++P
Sbjct: 350 MKPHQIEGFQFLCSNLVADDPGGCIMAHAPGSGKTFMIISFMQSFLAKYPQAKP-LVVLP 408
Query: 325 LSTLSNWVLEFEKWA----PTVSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEY---VI 483
L W EF +W P + S ++++L + K ++L Y+ ++
Sbjct: 409 KGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEKKSILFLGYQQFSTIV 468
Query: 484 KD--------KGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQN 639
D + +L KV +I+DEGH +N L Q L P +++L+GT QN
Sbjct: 469 CDDTTDSLSCQEILLKVP-SILILDEGHTPRNEDTNLLQSL-AQVQTPRKVVLSGTLYQN 526
Query: 640 KLPELWALLNFLLPSIFXSWSTFEQWVNAXFATT 741
+ E++ +LN + P F T + V A T
Sbjct: 527 HVKEVFNILNLVRPK-FLKLDTSKSAVKRILAYT 559
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 58.4 bits (135), Expect = 5e-09
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 10/166 (6%)
Frame = +1
Query: 220 LADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKWAPTVSVVSYXG 399
+ADEMGLGKT+Q IA+ + + G L++ P W E E+W P+
Sbjct: 224 IADEMGLGKTLQAIAIAGCFISE----GSILVVCPAVLRFTWAEELERWLPSC------- 272
Query: 400 SPQSRRLVQAQMRSTKF-----NVLLTTYEYVIKDKGVLAKVQWKYMIIDEGHRM----- 549
P LV + + V++ +Y+ + + + + +W +I+DE H +
Sbjct: 273 LPSDVHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKK 332
Query: 550 KNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPSI 687
K+ ++ VL+ H +LL+GTP ++ +++ +N L P +
Sbjct: 333 KSDPPEIKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINMLWPGL 378
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 57.6 bits (133), Expect = 8e-09
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Frame = +1
Query: 310 LIIVPLSTLSNWVLEFEKWAPT---VSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYV 480
LI+ P S + W E K +SV+ Y G +++ + K++V++TTY V
Sbjct: 636 LIVCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHEL----AKYDVVITTYSLV 691
Query: 481 IKDK-----------GVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGT 627
K K G LA+V W +++DE +KN+ + + + + A R L+GT
Sbjct: 692 SKRKHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLH-AKRRWCLSGT 750
Query: 628 PLQNKLPELWALLNFLLPSIFXSWSTFEQWVNAXFATTGGK 750
P+QN + +L++ FL + S+ TF + + ++ G+
Sbjct: 751 PIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGE 791
Score = 35.1 bits (77), Expect = 0.050
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +1
Query: 106 HESVTEQASILVNGNLKEYQIKGLEWLV---SLFNNNLNGILADEMGLGKTIQTIALV 270
H S ++ +L +Q L W+ + N GILAD+ GLGKT+ TIAL+
Sbjct: 527 HSSEASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKTVSTIALI 584
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 56.4 bits (130), Expect = 2e-08
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Frame = +1
Query: 55 DEYKTEEQTYYSIAHTVHESVTEQASILVNGNLKEYQIKGLEWLVSLFNNNLNGILADEM 234
DE+ +E+ + E+ + +++ L YQ + L W + GILADEM
Sbjct: 109 DEHMSEDVDLDQHNAVIAETAEPPSDLIMP--LLRYQKEFLAWATKQEQSVAGGILADEM 166
Query: 235 GLGKTIQTIALVTYLMEKKKVN-----GPYLIIVPLSTLSNWVLEFEKWAP--TVSVVSY 393
G+GKTIQ I+LV E + G L++ PL +S W+ E ++ + V+ Y
Sbjct: 167 GMGKTIQAISLVLARREVDRAQFGEAAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVY 226
Query: 394 XGSPQSRRLVQAQMRSTKFNVLLTTYEYVIKD--KGVL-AKVQWKY 522
G+ +++ + + ++ +LTTY V + + ++ +KVQ Y
Sbjct: 227 HGAKRAKNIKEFM----NYDFVLTTYSTVESEYRRNIMPSKVQCAY 268
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +1
Query: 484 KDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWAL 663
K+K +L V+W +I+DE H +K + + A +R L+GTPLQN++ EL++L
Sbjct: 344 KEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFA-LEATYRWALSGTPLQNRVGELYSL 402
Query: 664 LNFL 675
+ FL
Sbjct: 403 IRFL 406
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 56.0 bits (129), Expect = 3e-08
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 6/128 (4%)
Frame = +1
Query: 310 LIIVPLSTLSNWVLEFEKWA-PTV-SVVSYXGSPQSRRLVQAQMRSTKFNVLLTTYEYVI 483
LI+ P S +S W+ + E+ P + V Y G ++ + + K++++LTTY +
Sbjct: 342 LIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELM----KYDIVLTTYGTLA 397
Query: 484 KDKG----VLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPE 651
++ + K++W +I+DE H +KN + + ++V+ A R +TGTP+QN +
Sbjct: 398 VEESWEDSPVKKMEWLRIILDEAHTIKNANAQQSRVV-CKLKASRRWAVTGTPIQNGSFD 456
Query: 652 LWALLNFL 675
L++L+ FL
Sbjct: 457 LYSLMAFL 464
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 214 GILADEMGLGKTIQTIALVTY 276
G+ AD+MGLGKT+ ++L+ +
Sbjct: 262 GVFADDMGLGKTLTLLSLIAF 282
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 487 DKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALL 666
D G LAKV W +++DE +KNH ++ + A R L+GTP+QN + +L++
Sbjct: 462 DSGTLAKVGWFRVVLDEAQTIKNHRTQVARAC-CGLRAKRRWCLSGTPIQNTIDDLYSYF 520
Query: 667 NFLLPSIFXSWSTF 708
FL + + +F
Sbjct: 521 RFLKYDPYAVYKSF 534
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +1
Query: 136 LVNGNLKEYQIKGLEWLVSLFNNNLN---GILADEMGLGKTIQTIALVTYLMEKKKV 297
L++ L ++Q L W+ N+L+ GILAD+ GLGKT+ TIAL+ M + K+
Sbjct: 221 LLSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKL 277
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +1
Query: 487 DKGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALL 666
D G L KV W +++DE +KN+ ++ + T A R L+GTP+QN + +L++
Sbjct: 533 DCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCT-LRAKRRWCLSGTPIQNTIDDLYSYF 591
Query: 667 NFLLPSIFXSWSTF 708
FL + + +F
Sbjct: 592 RFLRYDPYAVYKSF 605
Score = 37.9 bits (84), Expect = 0.007
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 49 EDDEYKTEEQTYYSIA-HTVHESVTEQASILVNGNLK----EYQIKGLEWLVSLFNNNLN 213
ED +E+ Y A +++ +TE S L G L +Q L W+ ++ N
Sbjct: 244 EDRNPDNDERLVYQAALQVLNQPMTE--SDLPPGTLSVPLMRHQKIALAWMFQKETSSFN 301
Query: 214 ---GILADEMGLGKTIQTIALV 270
GILAD+ GLGKT+ TIAL+
Sbjct: 302 CPGGILADDQGLGKTVSTIALI 323
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +1
Query: 493 GVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNF 672
G LAKV W +++DE +KN+ ++ + A R L+GTP+QN + +L++ F
Sbjct: 787 GPLAKVSWFRVVLDEAQSIKNYKTQVARAC-WGLRAKRRWCLSGTPIQNSIDDLYSYFRF 845
Query: 673 LLPSIFXSWSTF 708
L + S+ F
Sbjct: 846 LKYDPYSSYVLF 857
Score = 35.5 bits (78), Expect = 0.038
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 151 LKEYQIKGLEWLVSLFNNNL---NGILADEMGLGKTIQTIALVTYLMEKKK 294
L +Q L W+ + GILAD+ GLGKT+ TIAL+ L E+ K
Sbjct: 563 LLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALI--LKERSK 611
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/64 (32%), Positives = 36/64 (56%)
Frame = +1
Query: 499 LAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLL 678
L ++ W + +DE ++++ T++ Y HR +TGTP+Q KL +L+ LL FL
Sbjct: 579 LTRIFWWRICLDEAQMVESNAAAATEMALRLY-TKHRWCITGTPIQRKLDDLFGLLKFLK 637
Query: 679 PSIF 690
+ F
Sbjct: 638 ANPF 641
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 175 LEWLVSLFNNNLNGILADEMGLGKTIQTIALV 270
L+ +F N + ADEMGLGKT++ +A +
Sbjct: 329 LDSATKMFLNPFSTNAADEMGLGKTVELLACI 360
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
pombe}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 39.1 bits (87), Expect = 0.003
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Frame = +1
Query: 310 LIIVPLSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQAQMRSTKFNVLLTTY-----E 474
LI+VP + +++W+ + +K + + + + + ++V++TT+ E
Sbjct: 757 LIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIE--LSPHSLAWDYDVVITTFSRLSAE 814
Query: 475 YVIKDKGVLAKVQWKYMIIDEGHRMKNHHCKLTQ--VLNTHYIAPHRLLLTGTPLQN--- 639
+ + K L +V W +++DEGH + LT + A +R LLTGTP N
Sbjct: 815 WNPRKKSPLIQVHWLRVMLDEGHTL-GSSVSLTNKFQMAVSLTACNRWLLTGTPTPNTPN 873
Query: 640 -KLPELWALLNFLLPSIF 690
+L + LL FL ++
Sbjct: 874 SQLSHIQPLLKFLHEEVY 891
>At3g32330.1 68416.m04125 DNA repair protein-related weak similarity
to SP|P41410 DNA repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}
Length = 327
Score = 37.5 bits (83), Expect = 0.009
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 6/183 (3%)
Frame = +1
Query: 151 LKEYQIKGLEWLV-SLFNNNLNGILADEMGLG-KTIQTIALVTYLMEKKKVNGPYLIIVP 324
+K + + L +L +L N NG + + L KT I+ + +EK N L ++P
Sbjct: 23 MKPHHFEILNFLYKNLVVENSNGCIIAQTPLSEKTFLMISFIYGYLEKHP-NSKSLFVLP 81
Query: 325 LSTLSNWVLEFEKWAPTVSVVSYXGSPQSRRLVQ----AQMRSTKFNVLLTTYEYVIKDK 492
L+ VL+ +W T S++ + G+ Q +V A+ + ++LL V+ D+
Sbjct: 82 KWVLNLEVLK--RWIKTWSII-FLGAKQFSNIVSDNSGAEASDSCRDILLNILSVVVFDR 138
Query: 493 GVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNF 672
G D + M + K+ + T PH++LLTG+ QN + E++ +L+
Sbjct: 139 GT-----------DPRNEMMSF-LKVVSRIKT----PHKVLLTGSLYQNNIKEVFNILDV 182
Query: 673 LLP 681
P
Sbjct: 183 AFP 185
>At3g32280.1 68416.m04116 hypothetical protein
Length = 474
Score = 34.3 bits (75), Expect = 0.088
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
Frame = +1
Query: 151 LKEYQIKGLEWLV-SLFNNNLNGILADEMGLG-KTIQTIALVTYLMEKKKVNGPYLIIVP 324
+K + + L +L +L N NG + + L KT I+ + +EK N L ++P
Sbjct: 312 MKPHHFEILNFLYKNLVVENSNGCIIAQTPLSEKTFLMISFIYGYLEKHP-NSKSLFVLP 370
Query: 325 LSTLSNWVLE-FEKWAPTVSVVSYXGSPQSRRLVQ----AQMRSTKFNVLLTTYEYVIKD 489
WVL ++W T S++ + G+ Q +V A+ + ++LL V+ D
Sbjct: 371 -----KWVLNGLKRWIKTRSII-FLGAKQFSNIVSDNSGAEASDSCRDILLNILSVVVFD 424
Query: 490 KGVLAKVQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLN 669
+G D + M C L V + PH++LLTG+ +N + E++ + +
Sbjct: 425 RGT-----------DPRNEMM---CFLKVV--SRIKTPHKVLLTGSLYKNNIKEVFNIFD 468
Query: 670 FLLPS 684
P+
Sbjct: 469 VAFPN 473
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA
repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 523 MIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLPS 684
+++DEGH +N + +VL T R+ L+GT QN EL +L P+
Sbjct: 744 LVLDEGHTPRNQSSLIWKVL-TEVRTEKRIFLSGTLFQNNFKELSNVLCLARPA 796
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 523 MIIDEGHRMKNHHCKLTQVLNTHYIAPHRLLLTGTPLQNKLPELWALLNFLLP 681
+++DE H +N + + L+ R+LL+GTP QN EL +L P
Sbjct: 186 LVLDEAHTPRNQRSCIWKTLSK-VETQKRILLSGTPFQNNFLELCNVLGLARP 237
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 217 ILADEMGLGKTIQTIALVTYLMEKKKVNGPYLIIVPLSTLSNWVLEFEKW 366
I++ G GKT TI + ++ P +II P S L W EF+KW
Sbjct: 38 IMSHAPGTGKTRLTIIFLQAYLQCFPDCKP-VIIAPASLLLTWAEEFKKW 86
>At2g01210.1 68415.m00033 leucine-rich repeat transmembrane protein
kinase, putative
Length = 716
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +1
Query: 160 YQIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIAL 267
+ ++GL+ LV L+ N+ +G L++E+G K +QT+ L
Sbjct: 109 FHLQGLQSLV-LYGNSFDGSLSEEIGKLKLLQTLDL 143
>At3g31900.1 68416.m04029 hypothetical protein
Length = 393
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 601 PHRLLLTGTPLQNKLPELWALLNFLLP 681
PH++LLTG+ QN + E++ +L+ P
Sbjct: 340 PHKVLLTGSLYQNNIKEVFNILDVAFP 366
>At1g73070.1 68414.m08449 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to receptor-like
protein kinase INRPK1 [Ipomoea nil]
gi|14495542|gb|AAB36558
Length = 598
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 163 QIKGLEWLVSLFNNNLNGILADEMGLGKTIQTIALV 270
++K L+ +V+LFNN+ G++ +GL ++ I +
Sbjct: 407 KLKNLK-IVTLFNNSFYGVIPPNLGLNSNLEIIDFI 441
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,531,232
Number of Sequences: 28952
Number of extensions: 356562
Number of successful extensions: 1157
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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