Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0467
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.1
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 28 1.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 28 1.5
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 3.4
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 4.5
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 26 6.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 6.0
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.0
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 7.9
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -1
Query: 517 PSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLP 338
PS+ S + S S + SSS+ + SS SS S ++S S S +P +
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
Query: 337 SGQIGSS 317
S SS
Sbjct: 215 SSSHSSS 221
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 361 PLPQANLPSGQIGSSVFKIG 302
P+P+A LPS IG VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -1
Query: 520 VPSAEQKQSGR---THWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQ 350
+PS E+ S R T + + G + + S D++LQS PL+ +S +
Sbjct: 498 LPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLKKAKEPEESSITP 557
Query: 349 ANLPSGQIGSSV 314
PS +G S+
Sbjct: 558 TTPPSFNVGESL 569
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/55 (21%), Positives = 22/55 (40%)
Frame = +3
Query: 396 KPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPCGIEPNQVPQ 560
+P D A DP++ P+ +P+ A + G+ P +VP+
Sbjct: 243 RPHPSDTIPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPR 297
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -1
Query: 424 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGF 284
+S LQ P+Q+++F+ +P P +P I ++ +G ++ F
Sbjct: 271 ASADRLQKNHPVQSSNFNPYTPAPSITVPPNYIPNTAM-MGPSYSSF 316
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 391 LQNNSFSMQSPLPQANLPS-GQIGSSVFK 308
L+ NSF + P+P ++PS I S VFK
Sbjct: 305 LKKNSFCLYLPIPLTSIPSTPSIRSHVFK 333
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 408 KDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 515
K +SD VELD + DP+ VLP+ ++D
Sbjct: 295 KSKSDRRKRLVELDAENENENDPSDFVLPNGQSNSD 330
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 6.0
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = -1
Query: 607 SMLSTFTAPLNVIVTI*GT*FGSIPHGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQA 428
SM+ T T+ I + T S PS+ +S + S+S + SSS +
Sbjct: 135 SMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSS----SKSSSSSSSSSKSSS 190
Query: 427 FSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVF 311
SS SS S ++S S S P ++ S + SS F
Sbjct: 191 SSSSSSKSSS---SSSSSSKSSASPSSSKSSSKFSSSSF 226
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 457 LFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGS 320
+FG + +V +S SS SG L++ S ++ Q+ LP+ + S
Sbjct: 397 IFGMNQSVIGANSGSSNSSGSSLKSAPVSPRTAAAQSLLPNSVVSS 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,740
Number of Sequences: 5004
Number of extensions: 48388
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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