Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0467
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    34   0.094
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    32   0.50 
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523...    31   0.88 
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    30   2.0  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    29   4.7  
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    29   4.7  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    28   8.2  
05_03_0635 - 16446805-16447716                                         28   8.2  

>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 372  EKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPCGIEPNQ 551
            +++L C+G  D KD S+  AC   +D N      P  C +   +    G R+   I  N+
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTV----PVTCSVSSVYEIGKGIRV---INLNE 1054

Query: 552  VPQMVTITFNGA-VNVDNIDL 611
               +V +  N + VN   +DL
Sbjct: 1055 ADNLVDVDINSSEVNSGTVDL 1075


>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
 Frame = +3

Query: 246 DWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKL------ACGSGDCIE-----KELFCN 392
           D  +N  N   I      L  +  DEP CP  +L      ACGS +CI+         C 
Sbjct: 216 DLLSNKINASTIGASMAYLSTVIADEPNCPTARLDNKTQFACGSNNCIDVANGGYSCACP 275

Query: 393 GKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPCGIEP 545
           G  D  +    + C  E +P    +C  +        C +     P G+EP
Sbjct: 276 GNSDDGNPYLLDDCKQEFNPTPKKNCSRS--------CGSTNIPFPFGLEP 318


>09_04_0426 -
           17451731-17451886,17451974-17452079,17452289-17452387,
           17452782-17452888,17452985-17453230,17454187-17454461,
           17454834-17454886,17455163-17455455
          Length = 444

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 369 IEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPCGIEP 545
           I  E+  N   +C+   SD  AC+  +D   + + DP     P C  + DG   P  I P
Sbjct: 232 ISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVP 291

Query: 546 NQVP 557
              P
Sbjct: 292 GYDP 295


>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
            14059378-14059539,14059642-14059768,14059869-14060200,
            14060289-14061083,14061379-14061714,14061791-14062730,
            14063338-14063588
          Length = 1633

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 484  HWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKI 305
            H   +  G +    ST    SS S  +S L  + +S   +  LP+ +LP G + S V  I
Sbjct: 1045 HQAITNHGEMHQEPSTCPQCSSGSLRKSLLSREGHSMDTEIILPEIDLPVGMVDSFVHDI 1104

Query: 304  G 302
            G
Sbjct: 1105 G 1105


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -1

Query: 547 FGSIPHG-IRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFS 371
           FGS   G    PSA    S  T   G  S   FGS+ST  AF   S+   G P  ++ F 
Sbjct: 79  FGSTSTGAFGQPSAPAFGSMSTGAFGQPSAPAFGSTST-GAFGQPSTQAFGTP-SSSPFG 136

Query: 370 MQSPLPQANLPSGQIG--SSVFKIGKT 296
             +P   A+ P+   G  SS F  G+T
Sbjct: 137 SSTPAFGAS-PAPVFGATSSTFGSGQT 162


>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 417 SDENACTVELDPNRAPDCDPNQCVLP 494
           S EN   +++DP+    C P+ C+LP
Sbjct: 248 SRENELPLKVDPSNCKHCTPSYCLLP 273


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = -3

Query: 635 ITVEYLFI*IDVVNIHSTVKCNSNHLRYLIWFNSTWDTC 519
           + V+Y+ I +++V+   T KC SN+ + +++  + + +C
Sbjct: 659 LAVKYIEIVLNMVHTSETAKCISNNSKNILYKTTLFSSC 697


>05_03_0635 - 16446805-16447716
          Length = 303

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 97  DPPMNISVSPPXVTAAMSSGAT 162
           DPP ++S+SPP   AA  S +T
Sbjct: 201 DPPTSLSLSPPGAAAAAISAST 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,154
Number of Sequences: 37544
Number of extensions: 322546
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)