Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0467
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 79 5e-15
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 4e-08
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 48 7e-06
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 48 1e-05
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 48 1e-05
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 47 1e-05
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 47 1e-05
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 46 4e-05
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 44 1e-04
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 44 1e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 44 2e-04
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 43 2e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 42 4e-04
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 42 4e-04
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 42 4e-04
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 42 4e-04
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 42 4e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 42 5e-04
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 41 0.001
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 38 0.006
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 37 0.014
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 37 0.018
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.024
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 36 0.032
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 35 0.055
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 35 0.073
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.073
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 34 0.096
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 34 0.13
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 34 0.13
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 32 0.39
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 30 1.6
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 30 1.6
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 29 2.7
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05) 29 3.6
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.6
SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7) 29 3.6
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 29 3.6
SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4) 28 6.3
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6) 28 8.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 78.6 bits (185), Expect = 5e-15
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = +3
Query: 459 APDCDPNQCVLPDCFCSADGTRIPCGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNR 638
A C P+ C LP+CFCS G +P G+ P ++PQM+ +TF+ A+N +Y++IFNG +
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGKK 623
Query: 639 HNPNGCQIKXNVF 677
NPNGC I+ F
Sbjct: 624 -NPNGCDIRATFF 635
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 55.6 bits (128), Expect = 4e-08
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +3
Query: 516 GTRIPCGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKXNVF 677
G +P G++P Q+PQM+ +TF+ A+N+ Y+ + N + NPNGC ++ F
Sbjct: 1553 GASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDTK-NPNGCNVRATFF 1605
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 55.6 bits (128), Expect = 4e-08
Identities = 29/75 (38%), Positives = 39/75 (52%)
Frame = +3
Query: 453 NRAPDCDPNQCVLPDCFCSADGTRIPCGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNG 632
N A CD +C P+C CS D + P G+ P PQ++ ITF+ + V N + Y+ G
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLSPALTPQIIMITFDDDITVINYEQYKDAVKG 83
Query: 633 NRHNPNGCQIKXNVF 677
NPNGC I F
Sbjct: 84 FT-NPNGCPITATFF 97
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 48.8 bits (111), Expect = 4e-06
Identities = 47/155 (30%), Positives = 64/155 (41%), Gaps = 11/155 (7%)
Frame = +3
Query: 90 DGRPADEYFRLTTEXDCRDVVRCDQ-GLXNSV------TRLASXRC-PGGLAFDIDRQTC 245
DGR FR E DC D R D+ G N T S RC PG D R C
Sbjct: 392 DGRCITSTFRCDREFDCTD--RSDERGCVNKTCAPYEFTCAFSGRCIPGRFRCD-HRSDC 448
Query: 246 DWKTNVKNCDQIEKPRKVLPILKTDEPI-CPEGKLACGSGD-CIEKELFCNGKPDCKDES 419
++ +NC + +P T P+ C + + C G+ C+ + C+G+ DC D S
Sbjct: 449 LDGSDEQNCQNVTRP--------TPPPVKCRKNERMCADGNGCVHRRWICDGERDCLDGS 500
Query: 420 DENACTVELDPNRAPDCDPNQCV-LPDCFCSADGT 521
DE C + C +C+ LP DGT
Sbjct: 501 DEAGCGTIGCSSDEFTCTNQKCIPLPQ---KCDGT 532
Score = 44.8 bits (101), Expect = 7e-05
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 458
C + C +G CI+ C+G DC+D SDE C + L P R
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDPNQCVLPDCF 503
CP C + C+ C+G+ DC D SDE+ C T N CD +C+
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEF-RCDDGRCITSTFR 401
Query: 504 CSAD 515
C +
Sbjct: 402 CDRE 405
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +3
Query: 309 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP----DCDP 476
L T + P C +G C+ KE C+G DC D SDE+ C P P C
Sbjct: 294 LSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSSDEDNCPTR-PPYTCPPSDFTCAN 352
Query: 477 NQCVLPDCFCSADGTRIPCG 536
+QCV P+ F DG CG
Sbjct: 353 SQCV-PNSF-RCDGEN-DCG 369
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C G CI C+ + DC D SDE C
Sbjct: 383 CSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 ICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 434
+CP CGS CI C+ P C DE C
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNC 607
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPD 467
C + C + CI C+G +C D SDE C P + PD
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVPPQ-PD 554
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C K AC SG+CI+ C+G DCKD SDE+ C + + C CV C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCD 1213
Query: 510 A-----DGTRIP--CGIE 542
DGT P CG++
Sbjct: 1214 GKKDCEDGTDEPGICGVQ 1231
Score = 37.9 bits (84), Expect = 0.008
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Frame = +3
Query: 189 LASXRCPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEG--KLACGSG 362
L + G LA IDR +T C+Q LP+ CP+ + C +G
Sbjct: 1081 LGESQINGTLAIAIDRIIISTET----CEQ-------LPVHSVPGFRCPDKSTQFQCVNG 1129
Query: 363 DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSADGT 521
C+ ++L C+G C D SDE C L A C+ +C+ D DGT
Sbjct: 1130 QCVSRDLICDGDNACLDFSDEANCKC-LSSKFA--CESGECI--DVVGLCDGT 1177
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +3
Query: 312 KTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVL 491
KT C G+ CG+G CI C+ DC D SDEN C CD +C+
Sbjct: 182 KTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNGRCIS 241
Query: 492 PDCFCSAD 515
C D
Sbjct: 242 SKWRCDHD 249
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C +G CI + C+ DC D SDE C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 47.6 bits (108), Expect = 1e-05
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Frame = +3
Query: 90 DGRPADEYFRLTTEXDCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNV-- 263
+GR FR E DC D +QG V R +C + CD K++
Sbjct: 13 NGRCITRAFRCDDEDDCLDNSD-EQGCSRKVCRDDQFQCGTSRKCIRKSKICDGKSDCSG 71
Query: 264 ----KNCDQIEKPRKVLPILKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCKDESDEN 428
KNC + + P P+ +P C + C +G C+++ C+G DC D SDE
Sbjct: 72 GEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCADGSDER 127
Query: 429 AC 434
C
Sbjct: 128 GC 129
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 327 ICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDP 476
+C + + CG S CI K C+GK DC DE C P P P
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKP 92
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN-QCVLPDCFC 506
C + C +G CI + C+ + DC D SDE C+ ++ + C + +C+ C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKIC 63
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
CP K C G CI++ CNGK DC D SDE C
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGC 38
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C + C +G CI +E C+ + DC D SDE C PN C C+ C
Sbjct: 2457 CDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCD 2516
Query: 510 AD 515
D
Sbjct: 2517 GD 2518
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNQCV 488
CP K C +G CI K C+G+ DC D SDE + C+ + DP C +C+
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCI 101
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C G +C +G CI + C+ + DC D SDE C P C +CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLCD 2268
Query: 510 AD 515
+
Sbjct: 2269 GE 2270
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +3
Query: 222 FDIDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKP 401
F D C +++ V CD I+ R C + C SG CI ++ C+G
Sbjct: 3012 FRCDNFRCVYRSRV--CDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCDGDN 3069
Query: 402 DCKDESDENA--CTVELDPNRAPDCDPNQCVLPDCFCSAD 515
DC D SDE A C V +A +C+ + C +
Sbjct: 3070 DCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWRCDGE 3109
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 204 CPGGLAFD-IDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKE 380
CP G+A D +D +TC EK V+P P C GK C +G CI
Sbjct: 799 CPYGMALDQLDNKTC------------EKNFTVIPT-----PPCSAGKFTCKNGHCISLR 841
Query: 381 LFCNGKPDCKDESDEN 428
C+G+ DC D SDE+
Sbjct: 842 WKCDGENDCVDNSDED 857
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 2/129 (1%)
Frame = +3
Query: 156 CDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVK-NCDQIEKPRKVLPILKTDEPIC 332
C G S AS C G F + C N K CD+ + E C
Sbjct: 2193 CHDGSDESSLVCASWTCEPG-HFSCNNGRC---INAKWVCDRENDCGDNSDEARCPEVTC 2248
Query: 333 PEGKLACGSGDCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPDCFCS 509
P + C +G C+ + C+G+ DC D SDE C P + N C+ C
Sbjct: 2249 PAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSSWLC- 2307
Query: 510 ADGTRIPCG 536
DG+ CG
Sbjct: 2308 -DGSD-DCG 2314
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 488
C +G+ +C G CI + C+G DC D SDE P R C + CV
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCV 3259
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 330 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLPDCF 503
C + AC +G CI+++ C+G+ DC D SDE C +E N C + ++C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 504 CSADGTRIPC 533
C DG R+ C
Sbjct: 1147 C--DG-RVDC 1153
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENA 431
C + AC SG C+ K C+G DC D SDE++
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 330 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENA--CT 437
CP G+ C +G CI E C+G+ DC+D SDEN+ CT
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 327 IC-PEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
IC P+ + C +G CI K+ C+G DC D SDE+ C
Sbjct: 86 ICDPKLEFQCANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
CP C SG CI C+G DC D SDE C
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDC 2530
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C C + C+ + C+G DC+D SDE C V C +C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCD 3066
Query: 510 AD 515
D
Sbjct: 3067 GD 3068
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 425
C + AC +G CI L C+G DC D SDE
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 488
C + + C SG CI C+ DC D SDE C + CD C+
Sbjct: 3168 CAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 37.1 bits (82), Expect = 0.014
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Frame = +3
Query: 309 LKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQ 482
L+ C G++ CGS + CI C+G DC D DE E N + C +
Sbjct: 2280 LRCPPTTCVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDERQDCRERPCNVSEFRCTSGE 2339
Query: 483 CVLPDCFCSADGTRIPCGIEPNQVPQMVTITFNGA 587
CV C D EP Q T GA
Sbjct: 2340 CVPASWRCDGDNDCTDKSDEPTDC-QRSNATCTGA 2373
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE--NACTVELDPNRAPDCDPNQCV 488
CP+ C + C+++ C+ DC D SDE C + N CD N+C+
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP---DCDPNQCVLPDC 500
C + C SG+C+ C+G DC D+SDE + CD +C+
Sbjct: 2328 CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCISTRL 2387
Query: 501 FCSAD 515
C D
Sbjct: 2388 LCDGD 2392
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C C +G C ++ C+G DC D SDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +3
Query: 366 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 506
CI + C+G+ DC D SDE C + C +C+ C
Sbjct: 3141 CIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCISASWVC 3187
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNQCV 488
C C + CI + C+G+ DC D SDE ++C V + P D +C+
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 31.5 bits (68), Expect = 0.68
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Frame = +3
Query: 330 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVE-LDPNRAPDCDPNQCVLPDCF 503
C + C S CI C+ DC D SDE CT + P + C+
Sbjct: 1047 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCTGKTCKPFEFACANGRHCIQRKWI 1106
Query: 504 CSAD---GTR---IPCGIE 542
C + G R + CG+E
Sbjct: 1107 CDGENDCGDRSDEVDCGLE 1125
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +3
Query: 315 TDEPICPEGKLA-----C-GSGDCIEKELFCNGKPDCKDESDENACTVELD 449
+DE C EG C G+ CI C+G DC D DE + ++LD
Sbjct: 117 SDESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 327 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDE 425
IC C + CI K C+G C D+SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 330 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 425
C + C + CI K C+G+ DC D SDE
Sbjct: 1127 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 1159
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 330 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDEN 428
C + + +C S C+ C+G+ DC D SDE+
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDES 2447
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + + C + C+ C+ DC D SDE C
Sbjct: 3330 CRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = +3
Query: 327 ICPEGKLACGSG-DCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPDC 500
+C G C CI C+G P C DE+ C +V CD +CV
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNCGSVNQCAPYHFRCDNFRCVYRSR 3024
Query: 501 FC 506
C
Sbjct: 3025 VC 3026
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 324 PICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV-ELDPNRAPDCDPNQCVLPD 497
P C G+ CG G+C+ + L CNG+ DC+D SDE C + + AP + VL D
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
Score = 34.7 bits (76), Expect = 0.073
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +3
Query: 327 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 434
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 506
C G+ C +G CI K L+C+G C D SDE C P+ C +C++ C
Sbjct: 91 CGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCEC---PSNMFLCPSGECIMGTQLC 146
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
CP C SG+CI C+GK DC D +DE C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 44.8 bits (101), Expect = 7e-05
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 303 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPD-CKDESDENACTVELDPNRAPDCDPN 479
P++ C + C +G+C+ K CNG D C D SDE+ CT L + C
Sbjct: 650 PVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGCTCGLHEFQ---CSSG 706
Query: 480 QCVLPDCFCSADGTRIPCG 536
+C+ FC DG + CG
Sbjct: 707 ECIEVATFC--DGKK-DCG 722
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 315 TDEPICPEG--KLACGSGDCIEKELFCNGKPDCKDESDENAC 434
+DE C G + C SG+CIE FC+GK DC D DE C
Sbjct: 689 SDESGCTCGLHEFQCSSGECIEVATFCDGKKDCGDGFDETHC 730
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C E ++ CG+G C+ K C+ DC D +DE C C +C+L C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCD 726
Query: 510 AD 515
D
Sbjct: 727 GD 728
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C +G+CI K C+G+ DC ++SDEN C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +3
Query: 333 PEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLPDCFCS 509
P+ + C +G CI + C+ DC D SDE N+C C CV+ C
Sbjct: 628 PDTQFRCTNGRCIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCD 687
Query: 510 AD 515
D
Sbjct: 688 QD 689
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 327 ICPEGKLACGSG-DCIEKELFCNGKPDCKDESDE--NACTVELDPNRAP 464
IC +G+ CGS CI + C+G DC + +DE N E N P
Sbjct: 788 ICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGP 836
Score = 34.3 bits (75), Expect = 0.096
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Frame = +3
Query: 270 CDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELD 449
CDQ + L C + C CI C+G DC D SDE C
Sbjct: 686 CDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC----- 740
Query: 450 PNRAPDCDPN--QCVLPDC 500
PN + C + QC +C
Sbjct: 741 PNSSQYCKSSEYQCSTGEC 759
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 366 CIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLPDCFCSAD 515
CI C+G+ DC D SDE C +P+ C +C+ C D
Sbjct: 599 CIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIPRRWVCDKD 649
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C + C +G C+ +E+ C+G C D SDE C + PD +CV P FC+
Sbjct: 38 CHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 510 AD 515
+
Sbjct: 95 GE 96
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +3
Query: 348 ACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 488
AC G C+ L CNG DC+D SDE + D R P P C+
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPPW-PRPCI 162
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C + C +G C+ +EL C+G C D SDE C + PD +CV P FC+
Sbjct: 38 CHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 510 AD 515
+
Sbjct: 95 GE 96
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 348 ACGSGDCIEKELFCNGKPDCKDESDE 425
AC G C+ L CNG DC+D SDE
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDE 142
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 43.6 bits (98), Expect = 2e-04
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Frame = +3
Query: 315 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDP 476
+DE CP ++ C S C+ + L C+GKPDC D SDE C V NR
Sbjct: 1333 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNV---- 1388
Query: 477 NQCVLPDCFC--SAD--GTRIPCGIEP 545
C + D FC +D + + CG+ P
Sbjct: 1389 -VCKVGDWFCGNKSDICNSLVDCGLSP 1414
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 330 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLP 494
C + + C S CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 1351
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +3
Query: 330 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVE---LDPNRAPDCDPNQCVLPD 497
C + C D CI C+G+ DC D DE C + P+ P P C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGCATTAPVITPSLGPP-HPGDCNFEK 396
Query: 498 CFC 506
C
Sbjct: 397 DMC 399
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 330 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDEN 428
C ++ C SG C++++ C+ DC D +DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C E + C +G C+++ L C+G C D SDE C+ P+ C +C+ C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
CP C SG+CI CN + DC D +DE C
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNADERNC 253
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 458
C C SG+CI +L C+ DC D SDE C V+ DP R
Sbjct: 704 CTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGVQ-DPGR 745
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 330 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFC 506
C C S G CI K C+G+ DC D SDE C ++ +C+ NQCV C
Sbjct: 90 CGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCVPLSWKC 148
Query: 507 SADGTRIPCGIE 542
+ P G +
Sbjct: 149 DGEKDCRPGGFD 160
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 437
C G+ C S +CI L C+G DC D SDE CT
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDEINCT 58
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 315 TDEPICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENAC 434
T +C + C GDCI C+G DC+ +DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 324 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
P+C G+ C G CI+ C+ DC D SDEN C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 303 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
P T P C G+ C +G CI C+ K DC D SDE C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 324 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
P CP G C G CI + L C+ + DC D DE +C
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 339 GKLACGSGDCIEKELFCNGKPDCKDESDENACTV 440
G + C +G CI+K C+ DC D SDE C +
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRCAL 3240
Score = 36.3 bits (80), Expect = 0.024
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 327 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 437
+C + C G C + C+ DC D SDE +C+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCS 3655
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDC--KDESDENAC 434
C + C G CI K C+ + DC D SDE+ C
Sbjct: 4059 CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESKC 4095
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 437
C + C SG CI C+ + DC D S+E T
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERNST 2818
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 330 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENAC 434
C + C + G CI C+ DC D SDE +C
Sbjct: 3425 CNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 330 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLPDCF 503
C + AC +G CI+++ C+G+ DC D SDE C +E N C + ++C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 504 CSADGTRIPC 533
C DG R+ C
Sbjct: 174 C--DG-RVDC 180
Score = 31.5 bits (68), Expect = 0.68
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Frame = +3
Query: 330 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVE-LDPNRAPDCDPNQCVLPDCF 503
C + C S CI C+ DC D SDE CT + P + C+
Sbjct: 74 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCTGKTCKPFEFACANGRHCIQRKWI 133
Query: 504 CSAD---GTR---IPCGIE 542
C + G R + CG+E
Sbjct: 134 CDGENDCGDRSDEVDCGLE 152
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 330 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 425
C + C + CI K C+G+ DC D SDE
Sbjct: 154 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 186
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 342 KLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 452
+L C +G C +K +C+G+ DC D SDE C+ +P
Sbjct: 228 QLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANP 264
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 425
C E + C SGDC+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLPDCFC 506
CP + C +G CI C+G DC D SDE +C+ + C +C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 507 SAD 515
D
Sbjct: 70 DRD 72
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 437
C G+ +C +G CI + C+ DC D SDE C+
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNCS 85
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 452
C + +C +G C+ L C+G DC D SDE +C P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 464
C + C + C+ C+G+ DC D SDE C+ P P
Sbjct: 149 CHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +3
Query: 330 CPEGKLAC---GSGDCIEKELFCNGKPDCKDESDE 425
CP + C SG CI CNG+ DC D DE
Sbjct: 192 CPADWVRCFYNSSGLCISTSWLCNGRVDCPDAWDE 226
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C G C +G CI L C+ DC DESDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 366 CIEKELFCNGKPDCKDESDENACTVELDPNR 458
CI+ C+GKP+C D SDEN C ++P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 318 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 428
D P C SG CI + C+GK DC D SDE+
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDES 391
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 318 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 488
D P C E + C +G CI+ + C+ +C D SDE C +PN C+ +C+
Sbjct: 1342 DCPPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGCAT-CEPNFF-RCNTGKCI 1396
Score = 35.9 bits (79), Expect = 0.032
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 330 CPEGKLACGS--GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCF 503
C ++C S CI K C+G DC D+SDE C N+ CD QC+ D
Sbjct: 1307 CKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCP-PCKENQF-RCDNGQCIDGDPR 1364
Query: 504 C 506
C
Sbjct: 1365 C 1365
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C C +G CI C+ DC D SDE C
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGC 1417
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +3
Query: 87 CDGRPADEYFRLTTEXDCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVK 266
C +P Y DC +CD + R RCP GL + + + CDW V
Sbjct: 1238 CKEKPNGHY---ADPRDCSRFYQCD-----AFHRAFLHRCPAGLKWSVKKTACDWPRYV- 1288
Query: 267 NCDQ-IEKPRKVLPILKTDEPIC 332
+CD+ P P+ T +P C
Sbjct: 1289 DCDRTTSTPPTPTPLTPTTKPAC 1311
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 135 DCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVKNCD-QIEKPRKVLPIL 311
DC +CD + R RC GL + I + TCDW NV +CD + P P
Sbjct: 796 DCSRFYQCD-----AFHRAFLHRCSPGLKWSITKTTCDWPRNV-DCDRKTPTPPSPTPPT 849
Query: 312 KTDEPIC 332
T +P C
Sbjct: 850 TTPKPAC 856
Score = 35.1 bits (77), Expect = 0.055
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +3
Query: 87 CDGRPADEYFRLTTEXDCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVK 266
C +P Y DC +CD + R RCP GL + + + TCDW V
Sbjct: 993 CKDKPNGHY---ADPMDCSRFYQCD-----AFHRAFLHRCPAGLKWSVKKTTCDWPRYV- 1043
Query: 267 NCDQ 278
+CD+
Sbjct: 1044 DCDR 1047
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 87 CDGRPADEYFRLTTEXDCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVK 266
C +P Y DC +CD + R RCP GL + + + CDW V
Sbjct: 888 CKDKPNGHY---ADPRDCSKFYQCD-----AFHRAFLHRCPAGLKWSVKKTACDWPRYV- 938
Query: 267 NCDQ 278
+CD+
Sbjct: 939 DCDR 942
Score = 32.3 bits (70), Expect = 0.39
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 11/117 (9%)
Frame = +3
Query: 87 CDGRPADEYFRLTTEXDCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVK 266
C +P Y DC +CD + + RCP GL + + + CDW V
Sbjct: 1138 CKDKPNGHY---ADPRDCSRFYQCD-----AFHKTFLHRCPAGLKWSVKKTACDWPRYV- 1188
Query: 267 NCDQIEKPRKVLPILKTD-----EPICPEGK------LACGSGDCIEKELFCNGKPD 404
+CD+ P K + + + P+G A +G C++ FC KP+
Sbjct: 1189 DCDRTTSTPPT-PTTKPECDLHCQTLSPDGSCTVAPGYAVVNGMCVD-TYFCKEKPN 1243
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 204 CPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPIL 311
CP GL ++I++ CD NV NC++ E L IL
Sbjct: 1485 CPHGLKWNIEKNACDHPVNV-NCNREEYDVLTLGIL 1519
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Frame = +3
Query: 87 CDGRPADEYFRLTTEXDCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVK 266
C RP Y DC +CD + RCP GL + + + CD V
Sbjct: 1343 CKDRPHGHY---ADPRDCSRFYQCDASHKTFL-----HRCPDGLKWSVKKTACDLPLYV- 1393
Query: 267 NCDQ-IEKPRKVLPILKTDEPICPEGKLAC 353
+CD+ I LP + P P K AC
Sbjct: 1394 DCDRTIPTVATGLP-SPSPSPPTPTPKPAC 1422
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C + C++++ CN K DC D SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 309 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVE 443
L + E C K C + CI+ CN + DC+D SDE +C E
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISCPPE 429
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 330 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLP 494
C + + C S CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 54
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 315 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVE 443
+DE CP ++ C S C+ + L C+GKPDC D SDE C E
Sbjct: 36 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRGE 84
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 37.5 bits (83), Expect = 0.010
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 425
C + C +G+CI K C+G+ DC ++SDE
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDE 623
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN--QCVLPDC 500
C + C CI C+G DC D SDE C PN + C + QC +C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 267 NCDQIEKPRKVLPILKTDEPICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 440
N IE+ + +L T + C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 68 NSKAIEEAKNILQE-STVKGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 125
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 330 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 434
C + C +G CI + C+ DC D+ DE C
Sbjct: 23 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 58
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 437
C + C +G+CI + C+ DC D SDE AC+
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACS 169
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 327 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
+C + K C +G C+ + C+G DC+D +DE C
Sbjct: 98 VCSQFK--CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C G+ C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCS 509
C + C SG CI C+G +C D SDE+ C + N C +CV C
Sbjct: 209 CAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC--KCFTNEL-TCSSGRCVQSINLC- 264
Query: 510 ADGTR 524
DG R
Sbjct: 265 -DGVR 268
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C +L C SG C++ C+G DC+ DE C
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRC 279
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 330 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 440
C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 261 VKNCDQIEKPRKVLPILKTDEPI-CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENAC 434
V +CD K PI + DE C K C +G C+ C+ DC D DE+ C
Sbjct: 924 VHDCDD-GSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHNC 982
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 330 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 434
C + C +G CI + C+ DC D+ DE C
Sbjct: 836 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 871
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
CP + C + C+ + C+G DC D SDE C
Sbjct: 21 CPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKNC 55
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 428
C + CG+ CI + C+G DC D SDE+
Sbjct: 65 CGIEEFDCGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +3
Query: 327 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 434
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 35.1 bits (77), Expect = 0.055
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 470
C +L C SG C+ C+G DC+ DE C + P + +C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNSLNC 276
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C SG CI C+ +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 351 CGSGDCIEKELFCNGKPDCKDESDENACT 437
C +G+CI + C+ DC D SDE AC+
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACS 35
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C G+ C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C +L C SG C+ C+G DC+ + DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C SG CI C+ +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C G+ C + CI + C+ DC D SDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 351 CGSGDCIEKELFCNGKPDCKDESDENAC 434
C +G I + C+G+ DC+D SDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C +G C+ + C+ DC D SDE C
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQC 152
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 34.3 bits (75), Expect = 0.096
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C SG CI C+ +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C +L C SG C+ C+G DC+ DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 34.3 bits (75), Expect = 0.096
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 ILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVEL-DPNRAPDCDPNQ 482
+ + D +C +G+ C G+C + +C+ +D + CTV +P + C P +
Sbjct: 521 VYQPDNTVCDKGRRVCSVGECAKSICTKYALEECQCTADNDLCTVCCKEPGKDDTCTPTR 580
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 333 PEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 437
P+ C +G CI C+ + DC D SDE C+
Sbjct: 8 PDTSFKCDNGRCISATWVCDTENDCGDNSDEMNCS 42
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 324 PICPEGKLACGS-GDCIEKELFCNGKPDCKDESDE 425
P C G+ C S G CI + C+G DC+D DE
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C + C SG CI C+ +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 434
C +L C SG C+ C+G DC+ DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 105 DEYFRLTTEXDCRDVVRCDQGLXNSVTRLASXR-CPGGLAFDIDRQTCDWKTNV 263
D++ + + + RD +G + AS + CPGGL ++ + CDW NV
Sbjct: 73 DDFCKYKPDGEYRDPYDACRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNV 126
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 135 DCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVK 266
+C V C G+ + T CP GL F+ D CDW VK
Sbjct: 471 NCYGFVLCGGGIAHKKT------CPPGLIFNTDLMVCDWSHEVK 508
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 135 DCRDVVRCDQGLXNSVTRLASXRCPGGLAFDIDRQTCDWKTNVKNC 272
+C + C G +A+ CP GLAF+ CD+ +NV C
Sbjct: 329 NCNLYITCSNGFT-----IANRHCPTGLAFNEAIGMCDYPSNVPGC 369
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Frame = +3
Query: 225 DIDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGK--------LACGSGDCIEKE 380
D+D + D K + NC Q +P+ P P E K + CG+G IE
Sbjct: 651 DVDGRQVDRKVEINNCPQWSRPKVTRPCQLPPCPPPNEWKTGPWRQCSVTCGTG--IETR 708
Query: 381 LFCNGKPDCKDESDENACTVELDPNRAPDCDPNQC 485
+ +E+AC + P+ C+P C
Sbjct: 709 TVECMDVEQNITQEESACAEKPKPHTTRRCNPGGC 743
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 204 CPGGLAFDIDRQTCDWKTNVKNCD 275
CP GL + + + TCDW V +CD
Sbjct: 146 CPSGLKWSVTKTTCDWPRYV-DCD 168
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 204 CPGGLAFDIDRQTCDWKTNVKNCD 275
CP GL + + + TCDW V +CD
Sbjct: 53 CPSGLKWSVTKTTCDWPRYV-DCD 75
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 351 CGSGDCIEKELFCNGKPDCKDESDENAC 434
C + + I+ + C+G DC D SDE+ C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
Length = 1604
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 492 PDCFCSADGTRIPC--GIEPNQVPQMVTITFNGAVNVDNIDLYEQI 623
P C CSA+GT C G Q ++VTIT + NV ++ E +
Sbjct: 1027 PGCRCSANGTWYLCDQGAAGKQPKELVTITRDTLQNVTGRNMSEYL 1072
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 351 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 470
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 2010 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 2050
>SB_50031| Best HMM Match : SOCS_box (HMM E-Value=2.7)
Length = 256
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 492 PDCFCSADGTRIPC--GIEPNQVPQMVTITFNGAVNVDNIDLYEQI 623
P C CSA+GT C G Q ++VTIT + NV ++ E +
Sbjct: 200 PGCRCSANGTWYLCDQGAAGKQPKELVTITRDTLQNVTGRNMSEYL 245
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 351 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 470
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 16 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 56
>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 411 DESDENACTVELDPNRAPDCDPNQCV 488
D+ D+ C +P++ PD D ++CV
Sbjct: 410 DQGDQGECVTVPEPDQVPDSDRDECV 435
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 351 CGSGDCIEKELFCNGKPDCKDESDENAC-TVELD-PNRAPDCDPNQCVLPDCFCSADGTR 524
C G C +L CN + +CK E C T+ N +C NQC + C++D R
Sbjct: 387 CERGKC---QLRCNTRENCKQTCKEGKCLTMSCKAKNCDQECPGNQCRMA---CTSDKCR 440
Query: 525 IPC 533
C
Sbjct: 441 QVC 443
>SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4)
Length = 178
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 345 LACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 515
+ CGS + + C DC E D C E D DC ++ D C++D
Sbjct: 2 IRCGSDEDCASDEDCASDEDCASEED---CASEEDCGSDDDCASDEDCASDEDCASD 55
>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
Length = 810
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 213 GLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGK 344
G+ I +T ++KN DQ E P + LP+ PI +GK
Sbjct: 85 GINQSIALRTMTMVNDLKNIDQREDPNQELPLGAFKTPIALQGK 128
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.9 bits (59), Expect = 8.4
Identities = 36/136 (26%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Frame = +3
Query: 159 DQGLXNSVTRLASXRCPGGLAFDIDRQTCDW---KTNVKNCDQIEKPRKVLPILKTDEPI 329
D G +S S P G D + C N K+ E P + +T +P
Sbjct: 1392 DNGQHSSTASCPSACSPSGCNPDCPARCCITVLQPLNEKHNTTAECPSECS---ETCKPE 1448
Query: 330 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQC---VLPD 497
CP + C +G+C L N KPDC + ++ PN C P+ C P+
Sbjct: 1449 CP---VKCCTGECPAGCLPSNCKPDCPSKCCLTILEPLQEGPNATAYC-PSDCFESCKPN 1504
Query: 498 C---FCSADGTRIPCG 536
C C A + P G
Sbjct: 1505 CPIKCCPATAIKCPVG 1520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,260,533
Number of Sequences: 59808
Number of extensions: 395919
Number of successful extensions: 1353
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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