Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0467
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein...    32   0.32 
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    30   1.7  
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    29   3.9  
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote...    28   5.2  
At3g57140.2 68416.m06362 patatin-related contains Patatin domain...    28   6.8  
At3g57140.1 68416.m06361 patatin-related contains Patatin domain...    28   6.8  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    28   6.8  

>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
           contains PF01422: NF-X1 type zinc finger
          Length = 912

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +3

Query: 351 CGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLP-DCFCSADGTRI 527
           C  G+C      C  K  C++   ++ C      ++ P C P   ++   C C      +
Sbjct: 419 CCDGECPPCSEICGKKLRCRNHKCQSPC------HQGP-CAPCPIMVTISCACGETHFEV 471

Query: 528 PCGIEPNQVP 557
           PCG E NQ P
Sbjct: 472 PCGTETNQKP 481


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/48 (45%), Positives = 24/48 (50%)
 Frame = -1

Query: 424 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFS 281
           SSDSSL       NNS S  SPLP +  P  +I SS    G  F G S
Sbjct: 18  SSDSSLNPSSEHGNNSSSSLSPLPSS--PPSRISSST---GTRFSGHS 60


>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 481 WLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQ-NNSFSMQSPLPQANLPSGQIGSSV 314
           W  + + A +   +   A  +D+S  +G  LQ +NSF  ++  PQA   +   G SV
Sbjct: 561 WASTSANAYYTPRANASASYTDTSALAGRSLQQSNSFPTRAGDPQATSTASNSGVSV 617


>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinases
          Length = 1032

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +3

Query: 336 EGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLPDCFCSAD 515
           +G L C +G      LFC  K        E         N A DC P  C  PD +  + 
Sbjct: 457 DGNLICTNGSISNANLFCESK------GKEWISLPNNSTNSALDCPPLACPTPDFYEYSP 510

Query: 516 GTRIPC 533
            + + C
Sbjct: 511 ASPLRC 516


>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 541 SIPHGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQS 362
           S  H I V   +  Q+GRTH  G     + G +  + +   DS  +S +P    S  + S
Sbjct: 716 SSSHSITVTEGDYLQTGRTH-NGFVLNLVRGENLRMNSEPEDSQNESEIPETPESVQLDS 774

Query: 361 P 359
           P
Sbjct: 775 P 775


>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 541 SIPHGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQS 362
           S  H I V   +  Q+GRTH  G     + G +  + +   DS  +S +P    S  + S
Sbjct: 716 SSSHSITVTEGDYLQTGRTH-NGFVLNLVRGENLRMNSEPEDSQNESEIPETPESVQLDS 774

Query: 361 P 359
           P
Sbjct: 775 P 775


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -1

Query: 544 GSIPHGIRVPSAEQKQSGRTHWLGSQSGALFGSSSTVQAFSSDSSL--QSGLPLQNNSFS 371
           GS   G    S     S  T   G+ S  LFGSSS+    +S +     SG    NN+FS
Sbjct: 190 GSSTPGFGASSTPAFGSTNTPAFGASSTPLFGSSSSPAFGASPAPAFGSSGNAFGNNTFS 249

Query: 370 MQSPLPQANLPS-GQIGSSVF 311
                  ++ P+ G   +S F
Sbjct: 250 SGGAFGSSSTPTFGASNTSAF 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,468
Number of Sequences: 28952
Number of extensions: 263151
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)