Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0465
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   0.71 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    28   1.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   8.7  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.7  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   8.7  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +3

Query: 186  TRRDSSVVFDYEPSQ----PAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANG 353
            T+ D  +V  ++P      P+ +    +L  +   +K + KTN+  +  +K      ++ 
Sbjct: 840  TKTDKIIVHKWQPQPVNTIPSSLSLGEQLSAFNNFMKLLKKTNDEHQNLHKEMLVVLSSQ 899

Query: 354  PNPTLRRGPRESLLLEDYMPWN 419
            P  T RR         DY+  N
Sbjct: 900  PKSTFRRAVENWKYKSDYLQLN 921


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 153 EVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSP 332
           E Q+   F    R   S++F  E    AP+++S++ +  +  +  +L   +G +T+ +  
Sbjct: 456 ERQLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIVSTLLALMDGLDTRGQVV 515

Query: 333 YCSQANGPN---PTLRRGPR 383
                N PN   P LRR  R
Sbjct: 516 VIGATNRPNDLDPALRRPGR 535


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
 Frame = +3

Query: 108 PPCPRXEATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKP 287
           PP P  + T + +             T+  + V++DY P +   ++     +I   +   
Sbjct: 700 PPLPPHDETQEPQVGGDVKATEHTQPTKTPAIVIYDYSPEEENEIELVENEQIQILEFVD 759

Query: 288 ----ILKTNNGAETKYKSPYCSQANGPNPTLRRGPRE 386
               + + + G +  + S Y  +  GPN T    P E
Sbjct: 760 DGWWLGENSKGQQGLFPSNYV-EITGPNETANNPPAE 795


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 201 SVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGP---NPTLR 371
           S++F  E    APV++S++ +I    +  +L   +G E++ +       N P   +P LR
Sbjct: 366 SIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGMESRGQVIIIGATNRPDAVDPALR 425

Query: 372 RGPR 383
           R  R
Sbjct: 426 RPGR 429


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -3

Query: 484 TSRYSGPSTRTALPARYSGLGPFQGM*SSSKRLSLGPRRSVGLGPFACEQYGDL 323
           +S++S  S+  + P+R +   P        K+ SLGP ++  +  FA EQ GDL
Sbjct: 343 SSQFSSRSSEYSKPSRPTAPKP------KFKQDSLGPNQARAMYSFAGEQPGDL 390


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 522 LFPKVRGPGSAG*RHGTPDPRRA 454
           LFP  R  G     HGTPD  RA
Sbjct: 425 LFPFARSRGFMRAHHGTPDDSRA 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,621
Number of Sequences: 5004
Number of extensions: 62075
Number of successful extensions: 171
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)