Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0465
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 35 0.079
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 31 1.3
08_01_0323 - 2903700-2903795,2903817-2903916,2904068-2904183,290... 30 1.7
01_05_0604 - 23583244-23584989 30 2.3
10_08_0187 + 15592130-15592512,15592597-15592972 29 3.9
09_03_0153 - 12814596-12815645 29 3.9
02_03_0177 - 16017650-16019599 29 3.9
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 29 5.2
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 29 5.2
07_03_0428 + 18095593-18095880,18095994-18096104,18096207-180962... 28 9.1
03_05_0768 + 27575303-27575980,27576427-27576543 28 9.1
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 28 9.1
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 34.7 bits (76), Expect = 0.079
Identities = 24/105 (22%), Positives = 43/105 (40%)
Frame = +3
Query: 132 THQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGA 311
T ++ A + RR+VP ++ + EP P S+++ +K+ P A
Sbjct: 313 TFESLAETAEFARRWVPFCKK-----YSIEPRAPE-FYFSQKIDYLKDKIHPSFVKERRA 366
Query: 312 ETKYKSPYCSQANGPNPTLRRGPRESLLLEDYMPWNGPNPEYRAG 446
+ Y + N ++ P E +++D PW G NP G
Sbjct: 367 MKRDYEEYKVRINALVAKAQKTPEEGWIMQDGTPWPGNNPRDHPG 411
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/105 (21%), Positives = 44/105 (41%)
Frame = +3
Query: 132 THQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGA 311
T A A + R++VP ++ ++ EP P S+++ +K+ P + A
Sbjct: 402 TFDALAETSEFARKWVPFVKK-----YNIEPRAPE-WYFSQKIDYLKDKVHPSFVKDRRA 455
Query: 312 ETKYKSPYCSQANGPNPTLRRGPRESLLLEDYMPWNGPNPEYRAG 446
+ + + NG ++ P E +++D PW G N G
Sbjct: 456 MKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPG 500
>08_01_0323 -
2903700-2903795,2903817-2903916,2904068-2904183,
2904273-2904561,2905520-2905548,2906154-2906294
Length = 256
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 581 GFLVALLIHGSPGQAGR-PVGCSRRSAGQ 498
G LV LL+ P +AGR P GCSRRSA +
Sbjct: 15 GPLVPLLLVPPPPRAGRAPRGCSRRSAAR 43
>01_05_0604 - 23583244-23584989
Length = 581
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 273 EKLKPILKTNNGAETKYKSPYCSQAN---GP--NPTLRRGPRES 389
+ +KP +K G K++SPY S +N GP P L RG E+
Sbjct: 125 DPIKPTIKYGKGGIGKFESPYDSDSNYDMGPPTEPELERGTGEA 168
>10_08_0187 + 15592130-15592512,15592597-15592972
Length = 252
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 464 GSGVP*RHPADPGPRTFGNSQRAGRPGQGIHVSEEQQE 577
G +P R P DP P T +S + GRP +H EE++E
Sbjct: 50 GFCLPSRRPGDPPPLTC-DSLQGGRP-PVVHADEEEEE 85
>09_03_0153 - 12814596-12815645
Length = 349
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 349 FACEQYGDLYLVSAPLLVFSIGLSFSVHILR 257
F E GDL+LV+ +SIG + VH+ R
Sbjct: 227 FLVESRGDLFLVAIAFEGYSIGGPYDVHVFR 257
>02_03_0177 - 16017650-16019599
Length = 649
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 465 PRRALHYQRDTLGWGHSRACNPRAKDSLWDHGAA 364
PRRA + R L SR N RA S+W + AA
Sbjct: 20 PRRAKQHGRPRLAAASSRWANRRASSSIWVNPAA 53
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/96 (21%), Positives = 39/96 (40%)
Frame = +3
Query: 159 QMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYC 338
+ RR+VP ++ F EP P S+++ +K++P A + +
Sbjct: 348 EFARRWVPFCKK-----FTIEPRAPE-FYFSQKIDYLKDKVQPTFVKERRAMKREYEEFK 401
Query: 339 SQANGPNPTLRRGPRESLLLEDYMPWNGPNPEYRAG 446
+ N ++ P E +++D PW G N G
Sbjct: 402 VRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPG 437
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 111 PCPRXEATHQARAPEVQMPRRFVPDTRR 194
P P +A +A AP V +PR+ +P T R
Sbjct: 85 PVPAHQARSEAPAPLVHVPRKGMPSTHR 112
>07_03_0428 +
18095593-18095880,18095994-18096104,18096207-18096263,
18096349-18096411,18096536-18096598,18096835-18096885
Length = 210
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 176 RTGHKTRFECGLRLRAESTGARAG 247
R HK + CG+R+RA T A AG
Sbjct: 54 RLQHKQQRRCGIRVRAVETDAAAG 77
>03_05_0768 + 27575303-27575980,27576427-27576543
Length = 264
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 579 FSCCSSDTWIPWPGRPARWL 520
F+C DT+ PW GR AR L
Sbjct: 112 FTCVVYDTFAPWAGRVARGL 131
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 362 NAAPWSQRESFARGLHALEWPQPRVSRW*CSARRGSGVP*RHPADPGPRTFGNSQRAGRP 541
+++P F+RGL ++ + PR + +A R + P A T S +AG
Sbjct: 23 SSSPRRYPAGFSRGLSSVSFGLPRSTT---TAARSTASPSAPSAAAAEATDAASAQAGSD 79
Query: 542 GQGIHVSEEQQ 574
G+G + EE++
Sbjct: 80 GKGDGIGEEER 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,483,322
Number of Sequences: 37544
Number of extensions: 490700
Number of successful extensions: 1605
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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