Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0465
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3) 30 1.7
SB_29956| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_57292| Best HMM Match : Vicilin_N (HMM E-Value=1.2) 28 7.0
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_45541| Best HMM Match : Protamine_3 (HMM E-Value=1.4) 28 7.0
SB_23502| Best HMM Match : MAM (HMM E-Value=0) 28 7.0
SB_20061| Best HMM Match : zf-GRF (HMM E-Value=0.089) 28 7.0
SB_403| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_55158| Best HMM Match : DPRP (HMM E-Value=0.66) 28 9.3
SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33) 28 9.3
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.3
SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13) 28 9.3
SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 9.3
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_786| Best HMM Match : EGF (HMM E-Value=0) 28 9.3
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2) 28 9.3
SB_51743| Best HMM Match : DPRP (HMM E-Value=0.4) 28 9.3
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.3
SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7) 28 9.3
>SB_23319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 47.6 bits (108), Expect = 1e-05
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Frame = +3
Query: 138 QARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASR---RLKIWTEKLKPILKTNNG 308
+++ PE + P++ PDT +++ +PS P + R + K + +KT
Sbjct: 120 ESKKPETKKPKK--PDTAPKATIKATPKPSAPVASTSKTTPARGRAGPSKTRQPIKTKP- 176
Query: 309 AETKYKSPYCSQANGPNPTLRRGPRESLLLEDYMPWNGPNPEYRAG-NAVRVEGP 470
++KSP + + G +P L +GP SLL+ ++ GP R G N V+GP
Sbjct: 177 KPPEFKSPLRTASTGVDPALAKGPNASLLIPQWVQTKGPAGSNRQGPNRALVQGP 231
>SB_32182| Best HMM Match : Ribosomal_L14 (HMM E-Value=3)
Length = 294
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P LRRGPRES ++D
Sbjct: 34 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLRRGPRESTKVDD 81
>SB_29956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = +3
Query: 138 QARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAET 317
+++ PE + P++ PDT +++ +PS APV + T K P ++T
Sbjct: 23 ESKKPETKKPKK--PDTAPKATIKATPKPS--APVAS-------TSKTTPARGRAGPSKT 71
Query: 318 KYKSPYCSQANGPNPTLRRGPRESLL 395
+ P Q GP + R+GP +L+
Sbjct: 72 RQPIPQWVQTKGPAGSNRQGPNRALV 97
>SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 28.7 bits (61), Expect = 5.3
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Frame = +3
Query: 132 THQARAPEVQMPRRFVPDTRRDSSVVFD---YEPSQPAPVQASRRLKIWTEKLK----PI 290
TH+ P+ + P ++VP+ R +V + Y S+ P + + LK T ++
Sbjct: 164 THEVSPPKKKEPEKYVPNPNRFETVSENKDHYRGSRAPPARMNPYLKGITMRVPSAQIQY 223
Query: 291 LKTNNGAETKYK-SPY--CSQANGPNPTLRRGPRESLLLEDYMPWN-GPNPEYRAGNAVR 458
+ T++G +K P S++ P + S+ +D+M +N P P R + +R
Sbjct: 224 MSTSHGDYRTWKPEPLEKISRSKTYAPPEQPFNETSIHRQDFMRFNQPPRPTARQPDKIR 283
Query: 459 VEGPEYRDVTQQT 497
+ G + T T
Sbjct: 284 MSGSMDKTTTNLT 296
>SB_57292| Best HMM Match : Vicilin_N (HMM E-Value=1.2)
Length = 278
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 171 RFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQAN 350
+F + + +F Y+ S+ V R L IW L AE +K PY S+
Sbjct: 20 KFTQQSGTHGTSLFKYKMSEDKKVAEKRELFIWKFDSDVSLLKEVIAEEPHKHPYASKER 79
Query: 351 G 353
G
Sbjct: 80 G 80
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 102 YCPPCPRXEATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKL 281
Y P R ++ P ++ R+ P T+R + Y P + +++R TE+
Sbjct: 821 YTPSTKRYTPCYERYTPCIE---RYTPSTKRYTPCYERYTPCTKRYIPSAKRYTPCTERY 877
Query: 282 KPILKTNNGAETKYKSPYCSQANGPNPTLRR-GPRESLLLEDYMP 413
P K + +P P PTL+ G E L+ D+ P
Sbjct: 878 TPCTKRYTPSTEPSHAP-------PKPTLQALGRHEILVTWDHPP 915
>SB_45541| Best HMM Match : Protamine_3 (HMM E-Value=1.4)
Length = 226
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +3
Query: 171 RFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQAN 350
+F + + +F Y+ S+ V R L IW L AE +K PY S+
Sbjct: 20 KFTQQSGTHGTSLFKYKMSEDKKVAEKRELFIWKFDSDVSLLKEVIAEEPHKHPYASKER 79
Query: 351 G 353
G
Sbjct: 80 G 80
>SB_23502| Best HMM Match : MAM (HMM E-Value=0)
Length = 407
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 538 PAGPLAVPEGPRARVCWVTSRYSGPSTRTALPARYSG 428
P P V +G + W TSR P+ T PA +SG
Sbjct: 271 PLNPF-VTDGGKVTYNWATSRGPSPTANTGPPADHSG 306
>SB_20061| Best HMM Match : zf-GRF (HMM E-Value=0.089)
Length = 175
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 298 LITEPRLNTSRRIVRKQMGPIQ-RCAVVPERVFCSRITCPGMAPTQS 435
LIT+P ++ S K G + +C V P+ + C+ C G AP ++
Sbjct: 66 LITKPLVSGSE----KNKGRVYCKCCVPPQNISCASFLCAGEAPKRA 108
>SB_403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1357
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 417 NGPNPEYRAGNA-VRVEGPEYRDVTQQTLARGPSGTANGPAG 539
N PE + V V GP+ + RGPSG+ N P G
Sbjct: 651 NVKGPEGKVSRPDVNVRGPKGKVPQDDVNVRGPSGSVNNPEG 692
>SB_55158| Best HMM Match : DPRP (HMM E-Value=0.66)
Length = 208
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 374 WSQRESFARGLHALE--WPQPRVSR 442
W+QR+ FAR + +LE P PR SR
Sbjct: 170 WAQRDRFAREIESLEKGQPVPRASR 194
>SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)
Length = 352
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 374 WSQRESFARGLHALE--WPQPRVSR 442
W+QR+ FAR + +LE P PR SR
Sbjct: 190 WAQRDRFAREIESLEKGQPVPRASR 214
>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2504
Score = 27.9 bits (59), Expect = 9.3
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Frame = +3
Query: 105 CPPCPRXEATHQARAPEVQMP-----RRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIW 269
C P P E A E P + +P RD+S + E V A+ L I
Sbjct: 1725 CTPPPHDEGKESADPKEFISPFHEKKAKELPAVERDAS---EMEKEITGDVGAA--LAIS 1779
Query: 270 TEKLKPILK-TNNGAETKYKSPYCSQANGPNPTLRRGPR 383
+ ++ LK T +G + K +A+ PNP R+G R
Sbjct: 1780 PDVIQESLKDTKDGKDMSEKDQDTGKASAPNPCRRQGKR 1818
>SB_41595| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 289
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P L RGPRES ++D
Sbjct: 157 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLSRGPRESTKVDD 204
>SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 550 DPCIRRATRKPLKLSFKSGWRSAQEFNYQLFCI 648
+PC + TRK L L+ W A FN LF +
Sbjct: 130 NPCHHQLTRKRLALTIAGSWIYAILFNLPLFFV 162
>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
Length = 1012
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 374 WSQRESFARGLHALE--WPQPRVSR 442
W+QR+ FAR + +LE P PR SR
Sbjct: 915 WAQRDRFAREIESLEKGQPVPRASR 939
>SB_24796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P L RGPRES ++D
Sbjct: 157 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLSRGPRESTKVDD 204
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 96 TTYCPPCPRXEATHQARAPEVQMPRRFVPDT 188
T Y PP P T PE PR P+T
Sbjct: 148 TKYIPPPPSPPTTTTTTTPETTAPRTTTPET 178
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P L RGPRES ++D
Sbjct: 520 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLSRGPRESTKVDD 567
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 243 QASRRLK-IWTEKLK-PILKTNNGAETKYKSPYCSQANGPNPTLRRGPRES 389
QA+RRL +W P +T SQ N P P+L GP ++
Sbjct: 1020 QANRRLNAVWIPPHSGPAFNEQPSPQTTLHDDISSQQNAPQPSLPTGPEQN 1070
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P L RGPRES ++D
Sbjct: 1781 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLSRGPRESTKVDD 1828
>SB_53546| Best HMM Match : DUF1153 (HMM E-Value=2)
Length = 306
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P L RGPRES ++D
Sbjct: 157 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLSRGPRESTKVDD 204
>SB_51743| Best HMM Match : DPRP (HMM E-Value=0.4)
Length = 281
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 374 WSQRESFARGLHALE--WPQPRVSR 442
W+QR+ FAR + +LE P PR SR
Sbjct: 203 WAQRDRFAREIESLEKGQPVPRASR 227
>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 352 PFACEQYGDLYLVSAPLLVFSIGLSFSVHILRRR 251
P+ CE+ DLYL A + S+G + I+ R
Sbjct: 150 PYVCEKSRDLYLSFAAWIAISMGAGLVISIVAAR 183
>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 374 WSQRESFARGLHALE--WPQPRVSR 442
W+QR+ FAR + +LE P PR SR
Sbjct: 1114 WAQRDRFAREIESLEKGQPVPRASR 1138
>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 374 WSQRESFARGLHAL--EWPQPRVSR 442
W+QR+ FAR + +L E P PR SR
Sbjct: 871 WAQRDRFAREIESLEKEQPVPRASR 895
>SB_15157| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 412
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P L RGPRES ++D
Sbjct: 157 KSTPRLERWSLRLEPF-----DFELQYK-PGESNIADPMSRLSRGPRESTKVDD 204
>SB_5665| Best HMM Match : DUF1153 (HMM E-Value=1.7)
Length = 246
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 243 QASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLED 404
+++ RL+ W+ +L+P E +YK P S P L RGPRES ++D
Sbjct: 157 KSTPRLERWSLRLEPF-----DFEIQYK-PGESNIADPMSRLSRGPRESTKVDD 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,064,870
Number of Sequences: 59808
Number of extensions: 535311
Number of successful extensions: 1887
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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