Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0465
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    31   0.66 
AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical...    31   1.2  
U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mito...    29   4.7  
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z70312-5|CAA94384.1|  361|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U47144-2|AAB52620.1|  235|Caenorhabditis elegans Regulator of g ...    28   8.1  
U20903-1|AAA84394.1|  361|Caenorhabditis elegans cyclin B protein.     28   8.1  

>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 24/88 (27%), Positives = 38/88 (43%)
 Frame = +3

Query: 126 EATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNN 305
           EA+  A AP     RR V  T + S+  F   P++P P +  R+ ++   K +P+L    
Sbjct: 360 EASIPAPAPSPPASRRSVSRTTQPSTSSFA-TPTEP-PAKNQRKRRVVPPKSEPVLSAKR 417

Query: 306 GAETKYKSPYCSQANGPNPTLRRGPRES 389
              T+ K     +        +R P ES
Sbjct: 418 VRATEAKKKAVEKVKEKEKKEQRKPNES 445


>AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical
           protein Y51H7C.13 protein.
          Length = 344

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 96  TTYCPPCPRXEATHQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQP 233
           TT  PPCP   AT+   APE  +P  +          V +  P QP
Sbjct: 146 TTTRPPCPYPPATNTPPAPEPTLPYEYTTQPPATWPPVENTTPEQP 191


>U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical
           protein F31F7.3 protein.
          Length = 174

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 148 LPKCRCRVDSYRTQDEIRVWSSITSRVNRRPCRPHDVSRYGPRN 279
           LPKCRC  DS  T     ++SS +S V      PH    +G RN
Sbjct: 97  LPKCRCSPDSIST--SFSLFSSSSSLVY---SSPHTTESFGKRN 135


>U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mitotic
           condensin subunit)homolog protein 1 protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 177 VPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPI 290
           V D + D  + FDY+P +P  V+ SR     +  L+P+
Sbjct: 276 VADVQNDDGMDFDYQPFEPENVEPSRPQSPESFALEPL 313


>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 157 CRCRVDSYRTQDEIRVWSSITSR 225
           C+ ++D Y   D  RVWS I+ +
Sbjct: 657 CQWKLDEYAAHDRFRVWSDISEK 679


>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 157 CRCRVDSYRTQDEIRVWSSITSR 225
           C+ ++D Y   D  RVWS I+ +
Sbjct: 657 CQWKLDEYAAHDRFRVWSDISEK 679


>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 157 CRCRVDSYRTQDEIRVWSSITSR 225
           C+ ++D Y   D  RVWS I+ +
Sbjct: 657 CQWKLDEYAAHDRFRVWSDISEK 679


>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 157 CRCRVDSYRTQDEIRVWSSITSR 225
           C+ ++D Y   D  RVWS I+ +
Sbjct: 657 CQWKLDEYAAHDRFRVWSDISEK 679


>Z70312-5|CAA94384.1|  361|Caenorhabditis elegans Hypothetical
           protein ZC168.4 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = +3

Query: 186 TRRDSSVVFDYEPSQPAPV---QASRRLKIWTEKLK------PILKTNNGAETKYKSPYC 338
           T+R++  +   +PS PAPV   Q S+R+ +   + K       I K     E KY    C
Sbjct: 39  TKREAREILALKPSNPAPVETAQKSQRINLQDAETKCLAMADDIYKYLVHHEKKYLLEEC 98

Query: 339 SQANG-PNPTLRR 374
               G P P +RR
Sbjct: 99  FMEGGEPTPKMRR 111


>U47144-2|AAB52620.1|  235|Caenorhabditis elegans Regulator of g
           protein signalingprotein 9 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 291 LKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLEDYMPW 416
           +K N G  T+ K    S    P    RR P E  L ED + W
Sbjct: 63  IKNNRGTFTRIKDRLSSALKSPASLFRRSP-EISLREDILSW 103


>U20903-1|AAA84394.1|  361|Caenorhabditis elegans cyclin B protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = +3

Query: 186 TRRDSSVVFDYEPSQPAPV---QASRRLKIWTEKLK------PILKTNNGAETKYKSPYC 338
           T+R++  +   +PS PAPV   Q S+R+ +   + K       I K     E KY    C
Sbjct: 39  TKREAREILALKPSNPAPVETAQKSQRINLQDAETKCLAMADDIYKYLVHHEKKYLLEEC 98

Query: 339 SQANG-PNPTLRR 374
               G P P +RR
Sbjct: 99  FMEGGEPTPKMRR 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,462
Number of Sequences: 27780
Number of extensions: 383415
Number of successful extensions: 1075
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)