Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0465
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.25 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.43 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +3

Query: 87  IELTTYCPPCPRXEATHQARAPEVQMPRRFVPDTRRDSSVV-FDYE---PSQPAPVQASR 254
           +E +  CPP PR   ++  +            D  R SS +  D++   P +  P+ A  
Sbjct: 206 LEQSPLCPPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAYE 265

Query: 255 RLKIWTEKLKP 287
             +I  +KL P
Sbjct: 266 MHQISKKKLSP 276


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = -1

Query: 405 NPRAKDSLWDHGAALDW----AHLLA 340
           NPR KD+LW     + W    AHLLA
Sbjct: 93  NPRGKDALWSLVPHMAWQLSTAHLLA 118


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 369 RRGPRESLLLEDYMPWNGPNPEYRAGNAVRVEGPEYRDVTQQ 494
           R  P E  L    +  + P+P+Y + ++  ++ P  R  TQQ
Sbjct: 420 RTSPMEYRLYNPALIQSQPSPQYPSTSSHILQQPSIRTYTQQ 461


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +3

Query: 273 EKLKP-ILKTNNGAETKYKSPYCSQANG---PNPTLRRGPRESLL 395
           EKLK  IL       +   S   S+ N    P PTL   P+ SLL
Sbjct: 358 EKLKQDILNLRTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLL 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,468
Number of Sequences: 438
Number of extensions: 4811
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)