Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0465
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33410.1 68417.m04748 signal peptide peptidase family protein...    29   2.5  
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain...    29   2.5  
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (...    29   3.3  
At4g33490.1 68417.m04756 nucellin protein, putative similar to n...    29   3.3  
At4g14040.1 68417.m02169 selenium-binding protein, putative cont...    28   5.8  
At5g56380.1 68418.m07038 F-box family protein similar to unknown...    28   7.6  
At4g00890.1 68417.m00120 proline-rich family protein contains pr...    28   7.6  
At1g55915.1 68414.m06413 expressed protein similar to Hypothetic...    28   7.6  
At1g23710.1 68414.m02993 expressed protein                             28   7.6  
At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR...    28   7.6  

>At4g33410.1 68417.m04748 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 372

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 317 SLGSVISLQYWLKFLGPYLETS*GLHGRRLTRLVIEDHTRI 195
           ++ SV SL YWL     Y++T  GL    L+R   +  TRI
Sbjct: 88  AIASVSSLFYWLSPYAVYMKTQLGLSDPFLSRCCSKSFTRI 128


>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1362

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
 Frame = +3

Query: 180  PDTRRDSSVVFDYEPSQPAPV-QASRRLKIWTEKLKPIL---KTNNGAETKYKSPYCSQA 347
            PD   D   +  Y   +     Q  + +K+WTE L+PI        GAE +  +   +  
Sbjct: 699  PDLHEDLYQLIKYSCGEMCSTEQLDKVMKVWTEFLEPIFGVPSRPQGAEDREDAVKSTNH 758

Query: 348  NGPNPTLRRGPRESLLLEDYMPWNGPNPEYRAGNAVRVEGPEYRDVT 488
            +  +      P+    + + M  NGP  +    N VR      +DVT
Sbjct: 759  DREDQEDAVSPQNGASIANSMRSNGPR-KVNESNQVRQASELDKDVT 804


>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
           (Ath-A) identical to gi:2827141
          Length = 1084

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/99 (22%), Positives = 41/99 (41%)
 Frame = +3

Query: 132 THQARAPEVQMPRRFVPDTRRDSSVVFDYEPSQPAPVQASRRLKIWTEKLKPILKTNNGA 311
           T +A +   +  R++VP  ++     F+ EP  P     S+++     K+ P       A
Sbjct: 403 TFEALSDTAEFARKWVPFCKK-----FNIEPRAPE-WYFSQKMDYLKNKVHPAFVRERRA 456

Query: 312 ETKYKSPYCSQANGPNPTLRRGPRESLLLEDYMPWNGPN 428
             +    +  + N    T ++ P E   ++D  PW G N
Sbjct: 457 MKRDYEEFKVKINALVATAQKVPEEGWTMQDGTPWPGNN 495


>At4g33490.1 68417.m04756 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 425

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 577 KPLKLSFKSGWRSAQEF 627
           KPL LSFK+GWRS   F
Sbjct: 335 KPLALSFKTGWRSKTLF 351


>At4g14040.1 68417.m02169 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); similar to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]
          Length = 487

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 535 AGPLAVPEGPRARVCWVTSRYSG 467
           A PLA   GPR ++ +VT+ YSG
Sbjct: 27  ATPLAAMAGPREKLIYVTALYSG 49


>At5g56380.1 68418.m07038 F-box family protein similar to unknown
           protein (emb|CAB62440.1); contains Pfam profile PF00646:
           F-box domain
          Length = 439

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 316 VSAPLLVFSIGLSFSVHILRRREACT 239
           +SA  +V+ +GL  S H L+R E CT
Sbjct: 296 LSATEVVYPVGLGSSFHKLKRLEVCT 321


>At4g00890.1 68417.m00120 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 431

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +3

Query: 222 PSQPAPVQASRRLKIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLE 401
           PS P+ +  +   +  ++   P+L + +  ET+ +SP  SQA+ P P   +   E+    
Sbjct: 184 PSSPS-MMLNATEEFESQPKPPLLPSKSIDETRLRSPLMSQASSPPPLPSKSIDENETRS 242

Query: 402 DYMPWNGPNPEYRA 443
              P + P  + +A
Sbjct: 243 QSPPISPPKSDKQA 256


>At1g55915.1 68414.m06413 expressed protein similar to Hypothetical
           30.6 kDa protein in ACT5-YCK1 intergenic region
           (Swiss-Prot:P38838) [Saccharomyces cerevisiae]; similar
           to Yhr134wp (GI:500671) [Saccharomyces cerevisiae]
          Length = 404

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
 Frame = +3

Query: 195 DSSVVFDYEPSQPAPVQASRRL--KIW--TEKLKPILKTNNGAETKYKSPY-----CSQA 347
           DSS++ D  P Q A + A RRL   IW  ++    +    N ++T YK P      C+  
Sbjct: 185 DSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALEDEENDSDT-YKEPVSIRETCTSV 243

Query: 348 NG 353
           NG
Sbjct: 244 NG 245


>At1g23710.1 68414.m02993 expressed protein
          Length = 295

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 261 KIWTEKLKPILKTNNGAETKYKSPYCSQANGPNPTLRRGPRESLLLEDYMPW 416
           K+ TEK K   KT+  +ETK K+     A+       R  +E +    Y+P+
Sbjct: 225 KVITEKKKGKEKTSTSSETKKKTTTTKSAHEKLYMRNRAMKEEVKHRSYLPY 276


>At1g17600.1 68414.m02173 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 556 CI-RRATRKPLKLSFKSGWRSAQEF 627
           CI +R+T K LKLS++ G RSA  F
Sbjct: 694 CIGKRSTLKKLKLSYRGGRRSALRF 718


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,127
Number of Sequences: 28952
Number of extensions: 353628
Number of successful extensions: 985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)