Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0464
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    29   0.94 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   1.6  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.9  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    27   3.8  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   5.0  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   6.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   8.7  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 349 AAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 465
           ++ P S ET + SP      PQI   T T+ SNGT + +
Sbjct: 115 SSVPSSTET-KASPTPLESKPQIVSDTTTETSNGTSRRR 152


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 128 QRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 280
           Q  +   N+E Q   S  ++L   + KN  +   E+   +IDY+CD  +AL
Sbjct: 333 QAAKAANNSEKQALDSACKELREAVLKNTSVPH-ELANSIIDYVCDALAAL 382


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 225  LEIFLFLGMKGTRSWSFERYICISAFSPSRCRCTRPLAIAGTEAPVAHTAVIA 67
            L  FL  G +G    ++   ICI      +C+   P+ +AG E  +   A IA
Sbjct: 1297 LHEFLVQGYQGVDMHTYHNIICILIEKAEKCK-DEPVILAGIEDNITLIAEIA 1348


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 294 LLDNLTLKAPYRRHLAQRRRSP 359
           LLDN+  KAP +R+LA    +P
Sbjct: 102 LLDNIKRKAPSKRNLANENTAP 123


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 584 LPSVWSLPWQRWPL 543
           +P  W  PWQ WP+
Sbjct: 469 IPLDWDRPWQAWPI 482


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 101 VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN 211
           + A  SG      DG NA  + Y++   +LV F+PKN
Sbjct: 77  IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 361 PSEETARPSPYAQHHPP 411
           P+  T  P+P  +HHPP
Sbjct: 729 PAPPTPAPTPAVKHHPP 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,233
Number of Sequences: 5004
Number of extensions: 53446
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)