Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0464
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1689 + 39204726-39205131,39208214-39208602,39208686-392088...    30   2.3  
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430...    29   3.9  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   5.2  
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408...    28   6.9  
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248     28   6.9  
01_01_0656 + 5013609-5014256                                           28   6.9  
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270...    28   9.1  

>01_06_1689 +
           39204726-39205131,39208214-39208602,39208686-39208820,
           39208936-39209001,39209150-39209218,39209402-39209455
          Length = 372

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +2

Query: 56  LKMKAITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEV 235
           L+++  +  C   A        R    R+     I   L KLQDLVP M K    S  ++
Sbjct: 283 LQLQPDSVACRARAKRGCATHPRSIAERE-RRTRISKRLKKLQDLVPNMDKQTNTS--DM 339

Query: 236 IQHVIDYICDLQSALE 283
           +   + YI +LQ  +E
Sbjct: 340 LDIAVTYIKELQGQVE 355


>04_04_0328 +
           24441747-24442073,24442205-24442327,24442947-24443012,
           24443155-24443223,24443263-24443307
          Length = 209

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 170 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 286
           L KLQ LVP M K    S  +++   +D+I  LQS L+N
Sbjct: 160 LRKLQALVPNMDKQTSTS--DMLDLAVDHIKGLQSQLQN 196


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 129 SDTGMAKTLRYKCTSRSSRISYPSCPRIER 218
           +DT +    RYKCT+   R SY    R+ER
Sbjct: 335 ADTFVEHFTRYKCTTAGERKSYGCMQRLER 364


>06_03_0930 -
           26038341-26038508,26039114-26039254,26040799-26040858,
           26040972-26041034,26041444-26041454,26041722-26041802,
           26042783-26043020,26043563-26043997
          Length = 398

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 612 TGTEVGGFCSPKRLEPPMATLAAS 541
           +G E G FCSP    PP+ T AA+
Sbjct: 109 SGGEDGAFCSPPPPPPPVVTAAAA 132


>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
          Length = 248

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +2

Query: 47  VQ*LKMKAITA-VCATGASVPAIASGRVQRH----RDGENAEIQMYLSKLQDLVPFMPKN 211
           VQ L M   TA   ++G       S R   H    RD      ++Y S L+ L+P     
Sbjct: 43  VQDLSMAPTTANAVSSGYGSGGSGSHRKLSHNAYERDRRKQLNELY-SSLRALLPDADHT 101

Query: 212 RKISKLEVIQHVIDYICDLQSALEN 286
           +K+S    +  V+ YI +LQ  +EN
Sbjct: 102 KKLSIPTTVSRVLKYIPELQKQVEN 126


>01_01_0656 + 5013609-5014256
          Length = 215

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 325 IVATLRSVAAAPPSEETARPSPYAQHHPP 411
           ++ T+ S    PP   T+ PSP    HPP
Sbjct: 172 LLGTMSSAPPPPPPPATSTPSPAPAAHPP 200


>06_01_0375 +
           2699179-2699264,2699697-2699786,2699913-2699991,
           2700816-2700893,2701290-2701338,2702183-2702232,
           2702704-2702853,2703437-2703517,2703593-2703609,
           2705804-2705893,2706033-2706111,2706234-2706311,
           2707554-2707687,2707858-2707936,2708108-2708188,
           2708263-2708400
          Length = 452

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 110 IASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVID--YICDLQSAL 280
           I   RV    D   A I+ + +  +DLV    +   +  LEVI+HV +    C+  SAL
Sbjct: 104 IKIARVHAASDPSTASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSAL 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,446,209
Number of Sequences: 37544
Number of extensions: 387939
Number of successful extensions: 1248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)