Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0464
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17519| Best HMM Match : HLH (HMM E-Value=6e-08)                     56   3e-08
SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)                     36   0.035
SB_3962| Best HMM Match : HLH (HMM E-Value=8.8e-05)                    35   0.061
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.14 
SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07)                   34   0.14 
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     32   0.57 
SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20)                   32   0.57 
SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18)                    31   0.76 
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)                      31   1.00 
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)                   31   1.00 
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)                   29   5.3  
SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_17519| Best HMM Match : HLH (HMM E-Value=6e-08)
          Length = 125

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 31/77 (40%), Positives = 50/77 (64%)
 Frame = +2

Query: 65  KAITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQH 244
           +A+ A   + +S+   AS   +  RD  +   + Y  +L+++VP +P  R+ISK+E++Q+
Sbjct: 14  EALRATIRSASSITR-ASIFSEFERDSNDNMSECY-ERLKNMVPNVPVGRRISKVEILQY 71

Query: 245 VIDYICDLQSALENHPA 295
           VIDYI DLQ+ALEN  A
Sbjct: 72  VIDYILDLQTALENQTA 88


>SB_15078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 164 MYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENHP 292
           M  S+L+ LVP +    ++SK++VI+  I YI  LQ AL   P
Sbjct: 455 MEYSRLRSLVPSVASKSRVSKIQVIEEAIKYIAQLQDALRTQP 497


>SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 19/64 (29%), Positives = 36/64 (56%)
 Frame = +2

Query: 104 PAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE 283
           P+  + R +R R+     +    S L+  +P+ P+ +K+SK+E ++  + YI  LQS +E
Sbjct: 69  PSAVARRNERERNRVRL-VNDGFSSLRQHIPYFPEKKKLSKVETLRCAVAYIKHLQSLIE 127

Query: 284 NHPA 295
            + A
Sbjct: 128 EYDA 131


>SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)
          Length = 232

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +2

Query: 77  AVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDY 256
           AV       PA+ + R  R R         ++ +L+  VP  PKN+K+SK++ ++  I+Y
Sbjct: 54  AVSTAKQKEPAVVARRNARERKRVKLVNDGFM-RLRKHVPTDPKNKKLSKVKTLRSAIEY 112

Query: 257 ICDLQSAL 280
           I  LQ  L
Sbjct: 113 IRHLQHLL 120


>SB_3962| Best HMM Match : HLH (HMM E-Value=8.8e-05)
          Length = 149

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +2

Query: 128 QRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYI 259
           QR R    AE   Y  KL+++VP + + +K++KL+ IQ   +YI
Sbjct: 87  QRDRLRSEAEQNAY-KKLREIVPALKEQKKVTKLDTIQQTCEYI 129


>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1432

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 155 EIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 271
           ++Q    +L+ +VP +P  R I K  ++QH  D+ICDL+
Sbjct: 829 QMQDAFCQLRSMVPDLP--RAIGKARLLQHAADFICDLK 865


>SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07)
          Length = 105

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +2

Query: 125 VQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 271
           + R R  E A I+  L+ L  L+P    NRK+SK  ++Q  I+YI  LQ
Sbjct: 41  ISRQRKREYA-IREALNHLNSLLPLDNPNRKLSKNMILQTAIEYIRSLQ 88


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = +1

Query: 526 LINIPRSGQRCHGRLQTLGRTEASDFSSSEDHLSMISYVR 645
           L+  PRS +RCH   +    TE SDF  SE  LS+ S +R
Sbjct: 303 LLRDPRSRRRCHSDYE----TEDSDFMESESELSIDSLLR 338


>SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20)
          Length = 153

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 179 LQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 286
           L+  +P  P N+K+SK+E ++  I+YI  LQ  L +
Sbjct: 94  LRKHIPTTPVNKKLSKVETLRTAIEYIKHLQRILND 129


>SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18)
          Length = 179

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 113 ASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN-RKISKLEVIQHVIDYICDLQSALEN 286
           AS R ++ R   N  +++   K    VP + +N +K+SK+EV++  IDYI  L   L N
Sbjct: 43  ASARERKRRHVLNNALELLRKK----VPCVDQNPQKLSKIEVLRLAIDYIAMLSCYLNN 97


>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
          Length = 374

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 408 SANHPPHTNTEIKRHQKNKTNLTGRRVKCNL 500
           SA H P    E K+H++ K +L GR++K  L
Sbjct: 318 SAKHLPQKKPESKKHEQTKKDLKGRKLKRQL 348


>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
          Length = 143

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 89  TGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDL 268
           TG S    A+   +R+R      +    + L+ L+P  P +RK+SK+E ++    YI  L
Sbjct: 46  TGLSKQRQAANARERNR---THSVNAAFNALRLLIPTEPSDRKLSKIETLRLASSYIAHL 102

Query: 269 QSAL 280
            + L
Sbjct: 103 STIL 106


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 364 SEETARPSPYAQHHPPQITLHTRTQKSNGTRKTKP 468
           S+E +RPSP+A     Q +   RT   N   K+ P
Sbjct: 110 SQEQSRPSPFASQEHNQTSPFARTMDDNAPSKSSP 144


>SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)
          Length = 124

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 179 LQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENHP 292
           L++L+P  P+ ++ +K E+I     YI  L   +E  P
Sbjct: 70  LRELIPLPPQEKEPTKTEIIWMAAKYIALLSDMVEQEP 107


>SB_8854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -1

Query: 192 TRSWSFERYICI-SAFSPSRC-RCTRPLAIA 106
           TRSW+F+R++ I +   P +C +C +  A+A
Sbjct: 149 TRSWNFQRHVLIHTGQKPYKCQKCPKAFALA 179


>SB_10793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 367 EETARPSPYA----QHHPPQITLHTRTQKSNGTRKTK 465
           ++   P+P+     QHH P+ T HT  Q ++ T +TK
Sbjct: 340 DQGTHPTPWTRVHIQHHGPRYTSHTMDQGTHPTIRTK 376


>SB_11829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 134 HRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 286
           H     A++      L+ L+P    + K+ K++++++ I+YI  L + L +
Sbjct: 443 HERRRVAQLNGAYQDLRQLIPGYQCDTKLPKIKILRYAINYIAHLDNILSD 493


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,104,882
Number of Sequences: 59808
Number of extensions: 416485
Number of successful extensions: 1204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)