Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0464
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    34   0.094
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    31   1.2  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   3.5  
AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical ...    28   6.2  
AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    28   8.1  
AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +2

Query: 164 MYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE 283
           M  S+L+ L+P +P  +K+SK+E+++  I YI  L + L+
Sbjct: 50  MAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLLQ 89


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +2

Query: 113 ASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENH 289
           A+GR +    G N  + M    L++ +P   +++K+SK+E ++   +YI  LQ  L+ +
Sbjct: 24  ANGRERARMHGLNNALDM----LREYIPITTQHQKLSKIETLRLARNYIDALQRMLQTN 78


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 343  SVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 465
            SV++A  S +   P P   HH   +T H  +  S+ T  +K
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 343  SVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 465
            SV++A  S +   P P   HH   +T H  +  S+ T  +K
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168


>AF003147-1|AAB54205.2|  569|Caenorhabditis elegans Hypothetical
           protein C11D9.1 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 361 PSEETARPSPYAQHHPPQ-ITLHTRTQKSNGTRKTKP 468
           PS++  +P    Q+HPP  +T H  T   + T  TKP
Sbjct: 43  PSQQI-QPQQQQQYHPPDHVTTHNGTTTFHTTNPTKP 78


>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +2

Query: 218 ISKLEVIQHVID-YICDLQSALENHPAVGQFD 310
           +S+LEV +  +D  + DLQS LE +P + +FD
Sbjct: 209 LSQLEVQKRKLDKQLIDLQSKLERNPELVEFD 240


>AL031269-2|CAA20332.1|  299|Caenorhabditis elegans Hypothetical
           protein VW02B12L.3 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +1

Query: 319 RLIVATLRSVAAAPPSEETARPSPYA----QHHPPQITLHTR--TQKSNGTRKTKPT 471
           R + A  R VAAAPP    A P+  A       PP +   TR     S GTR+  P+
Sbjct: 146 RPVAAPARPVAAAPPKPRPAAPAVAAPAVKASVPPTVRNGTRPAPATSAGTRRADPS 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,888
Number of Sequences: 27780
Number of extensions: 312587
Number of successful extensions: 933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)