Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0464
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   7.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   9.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 612 TGTEVGGFC 586
           TGT VGGFC
Sbjct: 6   TGTWVGGFC 14


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 143 GENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVID-YICDLQSALENHPAV 298
           G N ++    S++ D+V F+ K    S +EV+  V   Y+   ++ L N+ ++
Sbjct: 8   GGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = +3

Query: 405 SSANHPPHTNTEIKRHQKNKTNLTGRRVKCNLX*DLFMVNINK 533
           S +N   H N   K +  NK N         L    +++NI +
Sbjct: 84  SLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 399  TPSSANHPPHTNTEIKRHQKNKTNLTGRR 485
            T +SAN+   TN  + + ++ + N+T  +
Sbjct: 992  TQTSANNDKDTNAVVTQSKEARDNITATK 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,550
Number of Sequences: 438
Number of extensions: 3673
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)