Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0463
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    29   3.5  
08_02_0841 - 21749599-21749978,21750409-21753367                       28   8.2  

>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 9   LRXLWLGLWS-NVSLYRFVSSTVSTQPLPSLKSGRQATKLVLSEHP 143
           L  LWL +W  NV      S T+S   L  + +GR A+K+  S+ P
Sbjct: 289 LGYLWLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSKFP 334


>08_02_0841 - 21749599-21749978,21750409-21753367
          Length = 1112

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 21  WLGLWSNVSLYRFVSSTVSTQPLPSLKSGRQATKLVLSEH 140
           WLG  S+++   FV++ +S Q   SL   R  ++L+LSE+
Sbjct: 276 WLGNCSSLTQLAFVNNNISGQIPSSLGLLRNLSQLLLSEN 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,025
Number of Sequences: 37544
Number of extensions: 309988
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)