Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0463
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071510-1|AAL49132.1|  916|Drosophila melanogaster RE56564p pro...    81   1e-15
AE014298-760|AAF46050.1|  916|Drosophila melanogaster CG11473-PA...    81   1e-15
BT003187-1|AAO24942.1|  629|Drosophila melanogaster RE63465p pro...    49   7e-06
AY058246-1|AAL13475.1|  797|Drosophila melanogaster GH01206p pro...    49   7e-06
AE014134-573|AAF51132.3|  797|Drosophila melanogaster CG3332-PA,...    49   7e-06
AE014134-572|AAN10385.1|  629|Drosophila melanogaster CG3332-PB,...    49   7e-06
AE014298-762|AAF46052.1|  643|Drosophila melanogaster CG17758-PA...    31   1.1  
X62420-1|CAA44286.1| 2515|Drosophila melanogaster tudor protein ...    30   3.5  
AE013599-3155|AAF46693.1| 2515|Drosophila melanogaster CG9450-PA...    30   3.5  

>AY071510-1|AAL49132.1|  916|Drosophila melanogaster RE56564p
           protein.
          Length = 916

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 34/39 (87%), Positives = 37/39 (94%)
 Frame = +2

Query: 17  FVAWSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKARLE 133
           FV WS++QR TLPLCIFHRFHSAVTLAEIWKT+YKARLE
Sbjct: 878 FVPWSIIQRITLPLCIFHRFHSAVTLAEIWKTTYKARLE 916


>AE014298-760|AAF46050.1|  916|Drosophila melanogaster CG11473-PA
           protein.
          Length = 916

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 34/39 (87%), Positives = 37/39 (94%)
 Frame = +2

Query: 17  FVAWSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKARLE 133
           FV WS++QR TLPLCIFHRFHSAVTLAEIWKT+YKARLE
Sbjct: 878 FVPWSIIQRITLPLCIFHRFHSAVTLAEIWKTTYKARLE 916


>BT003187-1|AAO24942.1|  629|Drosophila melanogaster RE63465p
           protein.
          Length = 629

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  WSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 127
           W+++   ++PL IF+RFHS + L E+WK +YKA+
Sbjct: 594 WTIITHISMPLAIFYRFHSTICLFEVWKITYKAK 627


>AY058246-1|AAL13475.1|  797|Drosophila melanogaster GH01206p
           protein.
          Length = 797

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  WSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 127
           W+++   ++PL IF+RFHS + L E+WK +YKA+
Sbjct: 762 WTIITHISMPLAIFYRFHSTICLFEVWKITYKAK 795


>AE014134-573|AAF51132.3|  797|Drosophila melanogaster CG3332-PA,
           isoform A protein.
          Length = 797

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  WSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 127
           W+++   ++PL IF+RFHS + L E+WK +YKA+
Sbjct: 762 WTIITHISMPLAIFYRFHSTICLFEVWKITYKAK 795


>AE014134-572|AAN10385.1|  629|Drosophila melanogaster CG3332-PB,
           isoform B protein.
          Length = 629

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 26  WSLVQRFTLPLCIFHRFHSAVTLAEIWKTSYKAR 127
           W+++   ++PL IF+RFHS + L E+WK +YKA+
Sbjct: 594 WTIITHISMPLAIFYRFHSTICLFEVWKITYKAK 627


>AE014298-762|AAF46052.1|  643|Drosophila melanogaster CG17758-PA
           protein.
          Length = 643

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 23  AWSLVQRFTLPLCIFHRFHS 82
           AW+++   ++PL IF+RFHS
Sbjct: 511 AWTIITHVSMPLAIFYRFHS 530


>X62420-1|CAA44286.1| 2515|Drosophila melanogaster tudor protein
            protein.
          Length = 2515

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 26   WSLVQRFTLPLCIFHR--FHSAVT 91
            W L QRF  P C+ HR  FHS VT
Sbjct: 1113 WQLEQRFADPPCMAHRCSFHSVVT 1136


>AE013599-3155|AAF46693.1| 2515|Drosophila melanogaster CG9450-PA
            protein.
          Length = 2515

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 26   WSLVQRFTLPLCIFHR--FHSAVT 91
            W L QRF  P C+ HR  FHS VT
Sbjct: 1113 WQLEQRFADPPCMAHRCSFHSVVT 1136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,028,033
Number of Sequences: 53049
Number of extensions: 545758
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)