Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0463
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35900.1 68417.m05099 DNA-binding protein-related weak simila...    29   3.9  
At3g05190.1 68416.m00566 aminotransferase class IV family protei...    27   9.0  

>At4g35900.1 68417.m05099 DNA-binding protein-related weak
           similarity to DNA-binding factor gmlip15 [Zea mays]
           GI:14289167
          Length = 245

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 63  SSTVSTQPLPSLKSGRQATKLVLSEHPWTE 152
           SST S+ PLPS  S  Q   LV  E  W +
Sbjct: 40  SSTSSSSPLPSQDSQAQKRSLVTMEEVWND 69


>At3g05190.1 68416.m00566 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 555

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 684 SQIYSDFVITNIFKRISKRYXASIDIRKMSKDLYVSKK*AENMF 553
           S+I+ + ++ NI  +I      + D   + KD YVS+  A N+F
Sbjct: 408 SKIHHNNLLNNILAKIESNNTNAADAIMLDKDGYVSETNATNIF 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,406
Number of Sequences: 28952
Number of extensions: 274062
Number of successful extensions: 501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)