Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0462
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    30   0.37 
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    28   1.1  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   2.0  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    27   2.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  

>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 293 QAMNDFKTMFPDMDDDVIEAVLRANQGAVDATIDQLLXMSTDNQNELLRLEMERVESN 466
           +A    K  FP+ DD +I AVL A+   ++   + LL +S     E    EME+ E++
Sbjct: 20  KARATLKEAFPNTDDAIIRAVLAASGYKLEPAFNALLGLSDPQVAE----EMEQAETS 73


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 339 SSSISGNIVLKSFIA*VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           SSS + N+++ S I+   SS  V  I   TSGT  V   T+   +P
Sbjct: 117 SSSTTDNVIVSSSISSTVSSTPVSTIYSGTSGTTFVSSSTTYQVIP 162


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 276 IVDAIAPPTSGTRSVRDVTSASPLPVAQLIYDAGLPQCL--RGSTP 145
           +V  + PP+S     + VT   P  V   IYD  L   L  +GSTP
Sbjct: 169 LVPLLPPPSSSIPRSKAVTIEDPSIVRTNIYDPSLDDVLKGKGSTP 214


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 380 DATIDQLLXMSTDNQNELLRLEMERV-ESNTPSKRKDRRNTR 502
           DAT+++L     + Q EL + + E+  E   P K+K +++++
Sbjct: 206 DATVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSK 247


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/79 (22%), Positives = 35/79 (44%)
 Frame = -2

Query: 384 ASTAPWFARRTASMTSSSISGNIVLKSFIA*VNSSCIVDAIAPPTSGTRSVRDVTSASPL 205
           +++ P     T+S +S+S +G+    S +   ++SC      PPT G+ S+    + +  
Sbjct: 82  SASTPIITESTSSTSSASTTGSS--SSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVP 139

Query: 204 PVAQLIYDAGLPQCLRGST 148
           P +       +P     ST
Sbjct: 140 PTSTSSTSIPIPPTSTSST 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,979
Number of Sequences: 5004
Number of extensions: 47696
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)