Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0462
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    38   0.010
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    31   0.88 
06_03_1320 - 29292986-29293005,29293222-29293282,29293530-292938...    30   2.0  
05_01_0203 + 1459600-1460010                                           30   2.0  

>03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-420209,
            420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 21/82 (25%), Positives = 42/82 (51%)
 Frame = +2

Query: 215  ALVTSLTDRVPLVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEAVLRANQGAVDATID 394
            +L+ +L D+V      M  T +LEF Q   + +    +  DD    VLR +   + +T++
Sbjct: 813  SLIVNLKDKVERQQAEM-ETQRLEFKQKQQEAQRKLSEAQDD--SEVLRRSNSKLQSTVE 869

Query: 395  QLLXMSTDNQNELLRLEMERVE 460
             L+   +  QN++  L+ +++E
Sbjct: 870  SLIEECSSLQNQIAELKRQKLE 891


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 32/95 (33%), Positives = 44/95 (46%)
 Frame = -2

Query: 381 STAPWFARRTASMTSSSISGNIVLKSFIA*VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           STAP    R+ S+T  SI   ++  S    V ++ I    + PT+ +R  R  T  +P  
Sbjct: 68  STAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSISSVSSRPTTPSR--RSSTVVAP-- 123

Query: 201 VAQLIYDAGLPQCLRGSTPCRHWPSSRHTTRL*TP 97
             Q I  A  P   R STP +  PS+   TR  TP
Sbjct: 124 -KQSIA-ASRPVPARSSTPVKTRPSTPTKTRPSTP 156


>06_03_1320 -
           29292986-29293005,29293222-29293282,29293530-29293804,
           29293881-29293974
          Length = 149

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +2

Query: 317 MFPDMDDDVIEAVLRANQGAVDATIDQLLXMSTDN 421
           MFP++ ++ I+ +L+AN+  +  T+D L  +++ N
Sbjct: 66  MFPNISEEFIDELLQANEFDICLTVDMLHELNSQN 100


>05_01_0203 + 1459600-1460010
          Length = 136

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +2

Query: 113 VVCLEDGQCR---HGVDPLRHC 169
           +V  EDG CR   H V PLRHC
Sbjct: 89  LVSAEDGSCRCKAHSVQPLRHC 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,857,086
Number of Sequences: 37544
Number of extensions: 383024
Number of successful extensions: 1015
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)