Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0462
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   6e-20
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_24695| Best HMM Match : BiPBP_C (HMM E-Value=5.5)                   30   1.6  
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)            29   2.7  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  29   4.8  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_39805| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5)               28   6.3  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_10503| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)            28   8.4  
SB_6970| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=8.8)            28   8.4  
SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)                 28   8.4  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)          28   8.4  
SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037)                 28   8.4  
SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11)                   28   8.4  

>SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 66/154 (42%), Positives = 84/154 (54%), Gaps = 6/154 (3%)
 Frame = +2

Query: 215 ALVTSLTDRVPL-VGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEAVLRANQGAVDATI 391
           AL  SL  R P    G   S  QLEF  AM DFK+MFP+MDD+VIEAVLRAN G VDATI
Sbjct: 98  ALGQSLRSRPPRNSSGQQGSPRQLEFGSAMKDFKSMFPEMDDEVIEAVLRANNGLVDATI 157

Query: 392 DQLLXM-STDNQNELLRLEMERVESNTPSKRKDRRNTRPAXXXXXXXTAALVNVXD-ESV 565
           DQLL M +   +N     ++  + S   ++      T+           AL++V D E  
Sbjct: 158 DQLLTMGAVSGENSTNSSDLPFLPSYNDTE------TQEPPPAYTPREGALIDVEDSEPR 211

Query: 566 PLAVR--KRWIPRMLGPLPPMFLRIPPAT-DARI 658
           PL  R    W P +LG LP  FLR+ P++  AR+
Sbjct: 212 PLPARPYSAWNPPLLGTLPDDFLRLGPSSMQARV 245


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +2

Query: 299 MNDFKTMFPDMDDDVIEAVLRANQGAVDATIDQLLXMSTDNQNELLRLEMERVES 463
           + D K MFP +++ VI++VL A  G VDA    LL MS    +  L    +R +S
Sbjct: 181 IKDLKDMFPSIEESVIKSVLEACNGDVDAATTHLLTMSAGETDLRLGGAYKRTKS 235


>SB_24695| Best HMM Match : BiPBP_C (HMM E-Value=5.5)
          Length = 161

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 291 VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           +    +V  I  P+SG+  +RDV S+SP P
Sbjct: 22  IRDDVLVIGIDSPSSGSNGIRDVVSSSPTP 51


>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
          Length = 953

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 11  IMVSLGAPRVASI*LNDCNELLICVKRTQGVQRRVVCLEDGQCRHGVDPLRHCGS 175
           +M   GAP      L  C E  +C K+TQ + +RV  LE+ + +  V P   C S
Sbjct: 86  LMKEQGAPSATFHPLASCAENDLCSKQTQDLDKRVK-LEEKEVQALVPPRARCES 139


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 318  IVLKSFIA*VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
            + L++ +  +    +V  I  P+SG+  +R V S+SP P
Sbjct: 954  VALRAVMPRIRDDVLVIGIDSPSSGSNGMRGVVSSSPAP 992


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 11  IMVSLGAPRVASI*LNDCNELLICVKRTQGVQRRVVCLEDGQCRHGVDPLRHC 169
           +M   GAP      L  C E  +C K+TQ + +RV  LE+ + +  V P   C
Sbjct: 38  LMKEQGAPSATFHPLASCAENDLCSKQTQDLDKRVK-LEEKEVQALVPPRARC 89


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 402  KSWSMVASTAPWFARRTASMTSSSISGNI-VLKSFIA*VNSSCIVDAIAPPTSGTRSVRD 226
            ++W      AP      +++   ++   + V   F A +    +V  I  P+SG+  +R 
Sbjct: 945  RNWRPSLVAAPSVINEVSALAVLAVCVALRVAMLFAACIRDDVLVIGIDFPSSGSNGIRG 1004

Query: 225  VTSASPLP 202
            V S+SP P
Sbjct: 1005 VVSSSPAP 1012


>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 267 AIAPPTSGTRSVRDVTSASPLPVAQLIYDAGLPQCLRGSTPCRHWPSSRHTTR 109
           +I  P  G+  +    SA+PLP A  +  AG+ Q L    P   W   R  +R
Sbjct: 459 SIITPNVGSGIMAPAPSATPLPAATTVPAAGM-QNLTPQVPIGKWVELREISR 510


>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 284 EFTQAMNDFKTMFPDMDDDVIEAVLRANQGAVDATIDQLL 403
           E  +AMN    +FP+   +V+E +L+   G +  TI+ +L
Sbjct: 245 EHARAMNILTRLFPEQKLNVLELILKGCSGDIVQTIECVL 284


>SB_39805| Best HMM Match : Pec_lyase_N (HMM E-Value=3.5)
          Length = 611

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = -2

Query: 402 KSWSMVASTAPWFARRTASMTSSSISGNIVLKSFIA*VNSSCIVDAIAPPTSGTRSVRDV 223
           ++W    + AP      +++   ++   ++  + I       +V  I  P+SG+  +R V
Sbjct: 72  RNWRPSLAAAPSVMNEVSALAVPAVCEAVLCAACI---RDDVLVIGIDSPSSGSNGIRGV 128

Query: 222 TSASPLP 202
            S+SP P
Sbjct: 129 VSSSPTP 135


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 291 VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           V    +V  I  P+SG+  +R V S+SP P
Sbjct: 742 VRDDVLVIGIDSPSSGSNGIRGVVSSSPAP 771


>SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 389 WWRLRRLGLPE 357
           WW +RRLGLPE
Sbjct: 52  WWAMRRLGLPE 62


>SB_10503| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)
          Length = 787

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 291 VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           V    +V  I  P+SG+  +R V S+SP P
Sbjct: 254 VRDDVLVIGIDSPSSGSNGIRGVVSSSPTP 283


>SB_6970| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=8.8)
          Length = 232

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 291 VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           V    +V  I  P+SG+  +R V S+SP P
Sbjct: 26  VRDDVLVIGIDSPSSGSNGIRGVVSSSPTP 55


>SB_48077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 389 WWRLRRLGLPE 357
           WW +RRLGLPE
Sbjct: 280 WWAMRRLGLPE 290


>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
          Length = 1851

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 291 VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           V    +V  I  P+SG+  +R V S+SP P
Sbjct: 589 VRDDVLVIGIDSPSSGSNGIRGVVSSSPTP 618


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 291 VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           V    +V  I  P+SG++ +R V S+SP P
Sbjct: 683 VRDDVLVIGIDSPSSGSKGMRGVVSSSPAP 712


>SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)
          Length = 933

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 74  LICVKRTQGVQRRVVCLEDGQCRHGVDPL 160
           L C+K T+G   ++VC+ + QC + ++ L
Sbjct: 578 LTCLKPTRGQTLKLVCMRNTQCYYSLERL 606


>SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
          Length = 214

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 389 WWRLRRLGLPE 357
           WW +RRLGLPE
Sbjct: 52  WWAMRRLGLPE 62


>SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 389 WWRLRRLGLPE 357
           WW +RRLGLPE
Sbjct: 147 WWAMRRLGLPE 157


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 291  VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
            +  + +V  I  P+SG+  +R V S+SP P
Sbjct: 1346 IRDNVLVIGIDSPSSGSNGIRGVVSSSPAP 1375


>SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11)
          Length = 1182

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 291 VNSSCIVDAIAPPTSGTRSVRDVTSASPLP 202
           V    +V  I  P+SG+  +R V S+SP P
Sbjct: 375 VRDDVLVIGIDSPSSGSNGIRGVVSSSPAP 404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,932,096
Number of Sequences: 59808
Number of extensions: 413135
Number of successful extensions: 1147
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)