Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0462
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46937-4|CAA87059.2|  221|Caenorhabditis elegans Hypothetical pr...    44   8e-05
AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical ...    34   0.11 
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    31   0.79 
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z48178-8|CAD54121.1|  214|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z46937-4|CAA87059.2|  221|Caenorhabditis elegans Hypothetical
           protein F43C1.5 protein.
          Length = 221

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = +2

Query: 281 LEFTQAMNDFKTMFPDMDDDVIEAVLRANQGAVDATIDQLLXMST 415
           L+F +AM DF+ MFP + +  IE VLR   G V ATI++LL  +T
Sbjct: 19  LDFDRAMLDFQAMFPSLSNSHIEYVLRKYDGDVSATINELLYDNT 63


>AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical
           protein Y46H3C.4 protein.
          Length = 616

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = +2

Query: 104 QRRVV--CLEDGQCRHGVDPLRHCGSPAS*IS*ATGKGLALVTSLTDRVPLVGGAMASTM 277
           QR+V+  C +    +HGV   +  G  A   +   G+  +L+T++       GG  +++ 
Sbjct: 93  QRKVLFACFKRSD-KHGVKVAQLAGGVADMSAYHHGEQ-SLMTTIVHLAQDYGGKDSASA 150

Query: 278 QLEFTQAMNDFKTMFPDMDDDVIEAVLRANQ 370
           Q  FTQ     +T+FP  DD+V+  +   NQ
Sbjct: 151 QYIFTQLSPVTRTLFPSHDDNVLRFLYEENQ 181


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
            protein C44E4.7 protein.
          Length = 1145

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +2

Query: 284  EFTQAMNDFKTMFPDMDDD---VIEAVLRANQGAVDATIDQLLXM-STDNQNELLRLEME 451
            E   A+ND +  F ++ DD   ++EAV  ANQ A+  T ++L  + S ++ ++++  E E
Sbjct: 903  ELKSALNDVQEEFKEVQDDLEQILEAVDFANQKALQVTEERLAVLESFNDMDDVIISEKE 962

Query: 452  R 454
            +
Sbjct: 963  K 963


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 248 LVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEAVLRANQ 370
           L GG  +++ +  FTQ     +T+FP  DD+V+  +   NQ
Sbjct: 829 LQGGKDSASARYIFTQLSPVTRTLFPAHDDNVLRFLYEENQ 869


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 248 LVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEAVLRANQ 370
           L GG  +++ +  FTQ     +T+FP  DD+V+  +   NQ
Sbjct: 829 LQGGKDSASARYIFTQLSPVTRTLFPAHDDNVLRFLYEENQ 869


>Z48178-8|CAD54121.1|  214|Caenorhabditis elegans Hypothetical
           protein C05C10.7 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
 Frame = -1

Query: 382 VYGALVCPKNSLDDIIVHIRKH----RFEV-VHRLSKFKLHSG 269
           V+ +L CP+N+L+  +  IR H    + E+ VH++ +  +H G
Sbjct: 84  VFNSLACPENNLEKSVCVIRLHDVLTKSEMGVHKMKRQLIHCG 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,668
Number of Sequences: 27780
Number of extensions: 293146
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)