Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0462
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   6.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   6.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   6.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   6.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   6.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 566 PLAVRKRWIPRMLGPLPPMFLRIPPATDARIDLXLEMDDDRIA 694
           P  +R+ +    L P P MFL+   + +   ++  E+D  R++
Sbjct: 393 PPQIRQAFAEETLQPGPSMFLKCVASGNPTPEITWELDGKRLS 435


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 224 TSLTDRVPLVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEA 352
           + +T    L+G    ST      +++ DF    P    DV+ A
Sbjct: 133 SDVTTLPTLIGKNETSTQSSRSVESVEDFDNEIPKNQGDVLTA 175


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 224 TSLTDRVPLVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEA 352
           + +T    L+G    ST      +++ DF    P    DV+ A
Sbjct: 181 SDVTTLPTLIGKNETSTQSSRSVESVEDFDNEIPKNQGDVLTA 223


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
 Frame = +2

Query: 335 DDVIEAVLRANQGAVDATIDQLLXMSTDNQ-NELLRLEMERVESNTPSKRKDRRNTRPAX 511
           +DVIE + +A+   ++ T    L  + +NQ N +L    ++   +      +  N +   
Sbjct: 172 EDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMV 231

Query: 512 XXXXXXTAALV----------NVXDESVPLAVRKRWIPRML 604
                 +   +          NV  + +P   RKR +P  +
Sbjct: 232 VSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 272


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 224 TSLTDRVPLVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEA 352
           + +T    L+G    ST      +++ DF    P    DV+ A
Sbjct: 181 SDVTTLPTLIGKNETSTQSSRSVESVEDFDNEIPKNQGDVLTA 223


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 224 TSLTDRVPLVGGAMASTMQLEFTQAMNDFKTMFPDMDDDVIEA 352
           + +T    L+G    ST      +++ DF    P    DV+ A
Sbjct: 181 SDVTTLPTLIGKNETSTQSSRSVESVEDFDNEIPKNQGDVLTA 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,519
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)