Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0462
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14710.1 68415.m01654 F-box family protein contains Pfam prof...    31   0.56 
At4g16070.1 68417.m02437 lipase class 3 family protein low simil...    29   3.9  
At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138...    28   5.2  
At4g14500.1 68417.m02235 expressed protein weak similarity to SP...    28   6.8  

>At2g14710.1 68415.m01654 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 362

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 23  LGAPRVASI*LN---DCNELLICVKRTQGV 103
           LG P + S+ LN   DCNELL+CVK    V
Sbjct: 77  LGIPGLESLELNNLVDCNELLVCVKNNGAV 106


>At4g16070.1 68417.m02437 lipase class 3 family protein low
           similarity to calmodulin-binding heat-shock protein
           CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
           profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
           region
          Length = 654

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 288 NSSCIVDAIAPPTSGTRSVRDVTSASPLPVA----QLIYDAGLPQCLRGSTPCRHWPSSR 121
           NS CI+  I     GT S++D  +A+   V      +++D GL   + G   C    ++R
Sbjct: 176 NSKCILLLIR----GTHSIKDTLTAATGAVVPFHHSVLHDGGLSNLVLGYAHCGMVAAAR 231

Query: 120 HTTRL*TPCV 91
              +L  PC+
Sbjct: 232 WIAKLSVPCL 241


>At1g04910.1 68414.m00488 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein'  based on similarity to axi 1
           protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 519

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +2

Query: 293 QAMNDFKTMFPDMDD----DVIEAVLRANQGAVDATIDQLLXMSTD 418
           Q M  F+T+FP +D+    D  E +   +QG + + +D ++ + +D
Sbjct: 343 QFMKPFRTLFPRLDNHSSVDPSEELSATSQGLIGSAVDYMVCLLSD 388


>At4g14500.1 68417.m02235 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 433

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 567 LLQFAKD-GFPECWVHYHLCFYEFHQPQMLGLILXWRW 677
           LL F K+  F E +V   LC        M+GL++ W W
Sbjct: 8   LLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSW 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,817
Number of Sequences: 28952
Number of extensions: 272932
Number of successful extensions: 732
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)