Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0460
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2GWP4 Cluster: Putative uncharacterized protein; n=2; ...    35   1.7  
UniRef50_O43023 Cluster: Uncharacterized zinc metalloprotease C3...    33   8.9  

>UniRef50_Q2GWP4 Cluster: Putative uncharacterized protein; n=2;
           Sordariales|Rep: Putative uncharacterized protein -
           Chaetomium globosum (Soil fungus)
          Length = 2145

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -2

Query: 333 MQRSEPPSASCHI*DPSSRPARTGPRPCPS 244
           MQRS PP A+ H   P S PA   P P PS
Sbjct: 275 MQRSPPPPAAIHPSSPRSAPATRSPTPSPS 304


>UniRef50_O43023 Cluster: Uncharacterized zinc metalloprotease
           C354.09c; n=1; Schizosaccharomyces pombe|Rep:
           Uncharacterized zinc metalloprotease C354.09c -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 794

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 201 WLSTFEVIFWPSSASLGRVWAQSLLVASSGP 293
           W+ TF   +W ++A LG++W+  +L  ++ P
Sbjct: 611 WIDTFGSEYWENAARLGKIWSYLILFLANDP 641


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,162,898
Number of Sequences: 1657284
Number of extensions: 12696673
Number of successful extensions: 33267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33254
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)