Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0460
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   5.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.5  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   7.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +1

Query: 403 KRSIIFVKYMCKVYVLICTMKRQPFSYETLNMDRFETQRNQYL 531
           +R++IFV+       L   +  Q     +++ DR++++R + L
Sbjct: 410 ERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKAL 452


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 135 SWPAVTQLGGTSSRPIQIQCHR 70
           SW     +  TSS+P+  Q H+
Sbjct: 178 SWNNPCSINSTSSQPVGTQIHQ 199


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 83  ICIGREEVPPSWVTAGQENNCP 148
           +C   +E+P    T G  NN P
Sbjct: 111 LCGSHDEIPDISSTRGNNNNTP 132


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 83  ICIGREEVPPSWVTAGQENNCP 148
           +C   +E+P    T G  NN P
Sbjct: 59  LCGSHDEIPDISSTRGNNNNTP 80


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 83  ICIGREEVPPSWVTAGQENNCP 148
           +C   +E+P    T G  NN P
Sbjct: 242 LCGSHDEIPDISSTRGNNNNTP 263


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 566 FFGTCFLWLCV 598
           F+G C+LW+ +
Sbjct: 172 FYGFCYLWVLI 182


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 428 YLTKIILRFAQFASAINNGYLRRRDEQS 345
           YL+   +  +QF + +   + + RDE S
Sbjct: 264 YLSSSTMSHSQFGNGLETSWGKSRDESS 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,149
Number of Sequences: 336
Number of extensions: 3426
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)