Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0460
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    33   0.052
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.0  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   6.0  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    26   6.0  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   6.0  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.9  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 201 WLSTFEVIFWPSSASLGRVWAQSLLVASSGP 293
           W+ TF   +W ++A LG++W+  +L  ++ P
Sbjct: 611 WIDTFGSEYWENAARLGKIWSYLILFLANDP 641


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 383  INNGYLRRRDEQSRQSKCNDRNHLQ 309
            +NNG++R R   +  SK NDR+ LQ
Sbjct: 1918 VNNGFIRVRAFLAGSSKKNDRDQLQ 1942


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 422 TKIILRFAQFASAINNGYLRRRDEQSRQ-SKCNDRN 318
           +++ ++ AQF +AI+NG    +  Q+RQ S  N  N
Sbjct: 166 SELTVKIAQFTAAISNGIRSIQQLQNRQASSANGNN 201


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 271 KDWAQTLPKLADEGQKMTSNVESHRKFD 188
           KD    LP+  D   ++ SN+ESH + D
Sbjct: 42  KDVPPNLPRQPDSWLRLCSNIESHDETD 69


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 143 NCFLGRP*PNWVGLPPDRYK 84
           NCFL    PN V LP D Y+
Sbjct: 408 NCFLSSNAPNAVNLPSDLYE 427


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 528 ILISLGFEPIHIKCFIRKRLTFHCTY*NIHFTHIFNKN 415
           I + L  EP+HIK   + R  F+ T     F + F+++
Sbjct: 235 IFLHLDLEPLHIKSLAKARKRFYETDLKTTFLNAFSRD 272


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 202 GSQHSKSFSGPRQPAWAGSGPSPCWS 279
           GS+     SG R PAW     +P W+
Sbjct: 842 GSKTPAWNSGSRTPAWNSGNKTPAWN 867


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,042
Number of Sequences: 5004
Number of extensions: 53390
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)