Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0460
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0873 + 8564560-8564647,8568122-8568309                           29   3.5  
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     29   3.5  
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    29   4.7  

>08_01_0873 + 8564560-8564647,8568122-8568309
          Length = 91

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 232 PRQPAWAGSGPSP 270
           PR+PAW GS PSP
Sbjct: 74  PRKPAWPGSSPSP 86


>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 377 NGYLRRRDEQSRQSKCNDRNHLQRHVTSR 291
           NG  RRRDE+ R+     R+H   H +SR
Sbjct: 414 NGEQRRRDERYRERAHGHRSHRDHHQSSR 442


>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 247 KLADEGQKMTSNVESHRKFDNXXXXXXXXXXXXXTIVFLAGRDPTGW 107
           K+AD+G+KM + V+ H K D+              +    G+D  GW
Sbjct: 423 KIADKGRKMVTIVDPHIKRDSSFHLHEEATAKGYYVKDATGKDFDGW 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,619,874
Number of Sequences: 37544
Number of extensions: 360027
Number of successful extensions: 862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)