Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0460
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    30   2.1  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  29   3.6  
SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)             29   3.6  
SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)              29   4.8  
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   28   8.4  
SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_52409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -3

Query: 497  ILSVSYENG*RFIVHIKTYTLHIYLTKIIL-RFAQFASAINNGYLRRRDEQSRQSKCNDR 321
            IL + Y  G  F+   K Y ++    +I L R  +    +     RRR ++ R+ +   R
Sbjct: 2029 ILKIPYRRGQGFVSKGKRYVINRKAYRIQLTRRRRIIRRVRRQRRRRRRQRRRRKRRRRR 2088

Query: 320  NHLQRHVTSRTRAR 279
               +R  T RTR R
Sbjct: 2089 RRRRRRRTRRTRRR 2102


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 365 RRRDEQSRQSKCNDRNHLQRHVTSRTRARDQQ 270
           RRR EQ    +  +R H +R  T  TR R QQ
Sbjct: 366 RRRQEQKTPEEGKNRKHQKRARTKNTRRRHQQ 397


>SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)
          Length = 352

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 100 LPTDTNTVSQKKIKKMLFLIIVRMQTCL 17
           +PTDTN  S+KK+ K+L  + +    C+
Sbjct: 218 VPTDTNRESKKKLAKLLASVTIAFYICV 245


>SB_2703| Best HMM Match : PMP22_Claudin (HMM E-Value=2.5)
          Length = 281

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 334 NATIGTTFSVMSHLGPELATSKDW 263
           NAT G T++V++H   E+ T  DW
Sbjct: 177 NATSGVTYTVVNHQCAEMGTRFDW 200


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 76  TLYLYRSGGSPTQLGHGRPRKQLSFLLCESLLKKSRCCQTYGGSQHSKSFSGPRQPAWAG 255
           TLY++    S + L      K+L  L   S+ ++ + C T  GS+   +F  P Q  WA 
Sbjct: 641 TLYVFDGNASVSNLISHNTAKKLQLLRVNSVSEQEQQCNTSLGSEMKSNF--PFQ-GWAT 697

Query: 256 SG 261
            G
Sbjct: 698 KG 699


>SB_55360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 541  HLTXNIDFFGFRTYPY*VFHTKTAD 467
            H+T  + FFG  T+ +  FH KT +
Sbjct: 1561 HITLEVGFFGLSTFAWIGFHDKTIE 1585


>SB_52409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 311 QRHVTSRTRARDQQGLGPDPAQAG*RGP--END 219
           Q+H   +  ++D QG GPD  Q G  G   END
Sbjct: 145 QKHTHQKATSKDPQGKGPDIKQLGKYGEAVEND 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,445,143
Number of Sequences: 59808
Number of extensions: 419702
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)