Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0460
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    30   1.8  

>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = +1

Query: 91  RSGGSPTQLGHGRPRKQLSFLLCESLLKKSRCCQTYGGSQHSKSFSGPRQPAWAGSGPSP 270
           RS  SPT L H R R + + L    LL++SR       S ++ S S   + A++ S P  
Sbjct: 250 RSPTSPTLLQHARQRSEETMLRSPQLLRESRKADKPWQSSYAPSSS---RNAFSQS-PHR 305

Query: 271 CWSRARVLD 297
            WS + V D
Sbjct: 306 DWSASTVYD 314


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = +1

Query: 91  RSGGSPTQLGHGRPRKQLSFLLCESLLKKSRCCQTYGGSQHSKSFSGPRQPAWAGSGPSP 270
           RS  SPT L H R R + + L    LL++SR       S ++ S S   + A++ S P  
Sbjct: 250 RSPTSPTLLQHARQRSEETMLRSPQLLRESRKADKPWQSSYAPSSS---RNAFSQS-PHR 305

Query: 271 CWSRARVLD 297
            WS + V D
Sbjct: 306 DWSASTVYD 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,956
Number of Sequences: 27780
Number of extensions: 319614
Number of successful extensions: 786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)