Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0460
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    29   2.2  
At1g75080.2 68414.m08720 brassinosteroid signalling positive reg...    29   3.9  
At1g75080.1 68414.m08719 brassinosteroid signalling positive reg...    29   3.9  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   6.8  
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    28   6.8  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   6.8  
At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative st...    27   9.0  

>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +1

Query: 97  GGSPTQLGHGRPRKQLSFLLCESLLKKSRCCQT--YGGSQHS---KSFSGPRQPAW-AGS 258
           GGS    GH R + QLSF   +SL + +   +T  + GS HS    SF      +W  GS
Sbjct: 173 GGSNGGRGHSRLKSQLSFTNHDSLARINEVNETPVHDGSGHSFSAASFGAATTDSWDDGS 232

Query: 259 G 261
           G
Sbjct: 233 G 233


>At1g75080.2 68414.m08720 brassinosteroid signalling positive
           regulator (BZR1) identical to to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 336

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 312 SASCHI*DPSSRPARTGPRPCPSWLTRARK*LRMLRATVS 193
           S SC +  P S P    P+P P+W + A++ + + + +++
Sbjct: 171 SNSCPVTPPVSSPTSKNPKPLPNWESIAKQSMAIAKQSMA 210


>At1g75080.1 68414.m08719 brassinosteroid signalling positive
           regulator (BZR1) identical to to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 336

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 312 SASCHI*DPSSRPARTGPRPCPSWLTRARK*LRMLRATVS 193
           S SC +  P S P    P+P P+W + A++ + + + +++
Sbjct: 171 SNSCPVTPPVSSPTSKNPKPLPNWESIAKQSMAIAKQSMA 210


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 398 QFASAINNGYLRRRDEQSRQ-SKCNDRNHLQRHVTSRTRAR 279
           +F +A +NGY+R R+  SR+ S+   R        SR+R R
Sbjct: 180 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGR 220


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 398 QFASAINNGYLRRRDEQSRQ-SKCNDRNHLQRHVTSRTRAR 279
           +F +A +NGY+R R+  SR+ S+   R        SR+R R
Sbjct: 180 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGR 220


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 398 QFASAINNGYLRRRDEQSRQ-SKCNDRNHLQRHVTSRTRAR 279
           +F +A +NGY+R R+  SR+ S+   R        SR+R R
Sbjct: 180 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGR 220


>At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative
           strong similarity to 2-isopropylmalate synthase (IMS1)
           [Arabidopsis thaliana] GI:12330687; contains Pfam
           profile PF00682: HMGL-like
          Length = 631

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 327 RSEPPSASCHI*DPSSRPARTGPRPCPSWL 238
           RS+    SC I DPS  P  T  RP P ++
Sbjct: 50  RSQTLRLSCSISDPSPLPPHTPRRPRPEYI 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,193,703
Number of Sequences: 28952
Number of extensions: 285552
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)