Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0459
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    30   0.40 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.6  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   2.2  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   2.9  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   6.6  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   6.6  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   6.6  

>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 313  GKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 480
            G    ID++  +++KR    Y  ++  ++     LE  ++R + EISD  +++  L
Sbjct: 837  GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +1

Query: 355  KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 522
            +R+C+   + +   + + +DL++       E S L+ QVNDL  +  K T +K+S+
Sbjct: 897  QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDLTEQ-AKITQRKLSE 951


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 322 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKD 441
           +NI D++ED I ++   Y +  A   DE+   E+ +  KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 373 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKK 513
           +H+ +   +DE     Y++  K ME  +L+ +   +  K VK  LKK
Sbjct: 578 FHQLVFSADDEYLASVYLIYLKQMETKNLSEEKPQV-NKIVKKILKK 623


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 343 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 474
           ED+ +    D+H   A  E+EK     + K   ME+ ++N  V+
Sbjct: 23  EDSNRGTITDFHIETANNEEEKDANVILNKSVKMEVEEVNGHVD 66


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 420 FQIEFFIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 298
           + +++ + K +   M V  +PL S F+  +N LRF   + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 373 YHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 471
           +HE I +L+D + +L   +++K++ IS L   V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,313
Number of Sequences: 5004
Number of extensions: 30424
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)