Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0459
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.081
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        30   1.7  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    29   5.3  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.0  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              28   7.0  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   7.0  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 346 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 489
           D +++  K    +  +LE +  DL+  +KRKD+ I+DLN  V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 343 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 471
           ED + R  +   +RI RLE    DL+ + +R     SD+N++V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +1

Query: 397  EDEKFD--LEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSK 522
            ++EKF   L  ++ RKD  I +LN+++  L+G + K T ++++K
Sbjct: 997  QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK-TRRQLNK 1039


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +1

Query: 343  EDTIKRVCKDYHERIARLE---DEKFDLEYIVKRKDMEISDLNSQVNDL 480
            ED +++V K     +A L+   +EK D E +++   + +++LN+Q+ DL
Sbjct: 1901 EDELEKVRKKEVSLLATLDTLREEKKDQEQMLQDNGIRLAELNTQIQDL 1949



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +1

Query: 334  DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 483
            D  E TIK + ++ +    R +DE  DL   V +K+ E   L++Q++DLR
Sbjct: 3021 DIAESTIKNIKQEKN----RFQDEVNDLHGKVSQKNSENELLHAQLDDLR 3066


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +1

Query: 334 DANEDTIKRVCKDYHERIARLEDE 405
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +1

Query: 337  ANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 498
            A+++ I+   +    ++++++DE  +L+    R+  EI DL +++N+L     +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 322 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 459
           + +  +NE  + RV  D  E  + L+ +K DLE I ++ +    +L
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,352
Number of Sequences: 59808
Number of extensions: 239772
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)