Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0459
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 107 8e-24
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 107 8e-24
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 98 7e-21
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 98 7e-21
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 95 5e-20
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 95 5e-20
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 87 1e-17
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 87 1e-17
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 40 0.002
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 38 0.008
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 38 0.008
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 36 0.041
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 36 0.041
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 34 0.094
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 33 0.16
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 33 0.16
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 31 0.87
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 29 3.5
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 29 3.5
AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical ... 29 3.5
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 4.7
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 4.7
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 4.7
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 4.7
AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical ... 29 4.7
Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical pr... 28 6.2
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 6.2
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 6.2
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 6.2
>AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 107 bits (257), Expect = 8e-24
Identities = 68/174 (39%), Positives = 85/174 (48%), Gaps = 1/174 (0%)
Frame = +1
Query: 121 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 301 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 480
++D NED ++ V + ER+ LE E +D+ YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 481 RGKFVKPTLKKVSK-YXXXXXXXXXXXXXXXXRNQLKVVKKXEFTLEEEDKEKK 639
RGKFVKPTLKKVSK R QLKVV K EF L+EED EKK
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKLKKKEATKVDFRAQLKVVDKNEFALDEEDTEKK 187
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 107 bits (257), Expect = 8e-24
Identities = 68/174 (39%), Positives = 85/174 (48%), Gaps = 1/174 (0%)
Frame = +1
Query: 121 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 301 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 480
++D NED ++ V + ER+ LE E +D+ YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 481 RGKFVKPTLKKVSK-YXXXXXXXXXXXXXXXXRNQLKVVKKXEFTLEEEDKEKK 639
RGKFVKPTLKKVSK R QLKVV K EF L+EED EKK
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKLKKKEATKVDFRAQLKVVDKNEFALDEEDTEKK 187
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 97.9 bits (233), Expect = 7e-21
Identities = 67/192 (34%), Positives = 87/192 (45%), Gaps = 1/192 (0%)
Frame = +1
Query: 127 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 307 XCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 483
++D N+ + ++ +D R+ LE+EKFD+ + V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 484 GKFVKPTLKKVSKYXXXXXXXXXXXXXXXXRNQLKVVKKXEFTLEEEDKEKKPDWSXGKP 663
GKFVKPTLKKVSKY RN LKVVKK T +E KK + GKP
Sbjct: 151 GKFVKPTLKKVSKYDNKFKSSGEVKEKSNFRNNLKVVKKE--TDLDEIMAKKKGTADGKP 208
Query: 664 GDXKVKXXXVEA 699
K + EA
Sbjct: 209 EWSKKEKKEEEA 220
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 97.9 bits (233), Expect = 7e-21
Identities = 67/192 (34%), Positives = 87/192 (45%), Gaps = 1/192 (0%)
Frame = +1
Query: 127 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 306
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 307 XCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 483
++D N+ + ++ +D R+ LE+EKFD+ + V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 484 GKFVKPTLKKVSKYXXXXXXXXXXXXXXXXRNQLKVVKKXEFTLEEEDKEKKPDWSXGKP 663
GKFVKPTLKKVSKY RN LKVVKK T +E KK + GKP
Sbjct: 151 GKFVKPTLKKVSKYDNKFKSSGEVKEKSNFRNNLKVVKKE--TDLDEIMAKKKGTADGKP 208
Query: 664 GDXKVKXXXVEA 699
K + EA
Sbjct: 209 EWSKKEKKEEEA 220
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 95.1 bits (226), Expect = 5e-20
Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 5/182 (2%)
Frame = +1
Query: 121 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 301 XXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 477
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 478 LRGKFVKPTLKKVSKY--XXXXXXXXXXXXXXXXRNQLKVVKK--XEFTLEEEDKEKKPD 645
LRGKFVKP+LKKVSKY R LK+VKK E + + K+ KPD
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKKSGESKAGTKEDFRANLKIVKKDVMEAIVNVKKKDDKPD 196
Query: 646 WS 651
WS
Sbjct: 197 WS 198
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 95.1 bits (226), Expect = 5e-20
Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 5/182 (2%)
Frame = +1
Query: 121 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 301 XXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 477
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 478 LRGKFVKPTLKKVSKY--XXXXXXXXXXXXXXXXRNQLKVVKK--XEFTLEEEDKEKKPD 645
LRGKFVKP+LKKVSKY R LK+VKK E + + K+ KPD
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKKSGESKAGTKEDFRANLKIVKKDVMEAIVNVKKKDDKPD 196
Query: 646 WS 651
WS
Sbjct: 197 WS 198
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 87.0 bits (206), Expect = 1e-17
Identities = 60/186 (32%), Positives = 82/186 (44%), Gaps = 6/186 (3%)
Frame = +1
Query: 121 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 301 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 477
N+D ++ ++ + D R+ LE+EK+D+ +I + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 478 LRGKFVKPTLKKVSKY---XXXXXXXXXXXXXXXXRNQLKVVKKXE-FT-LEEEDKEKKP 642
LRGKFVKP+LKKVSKY RN LK VKK FT + + K KP
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKP 208
Query: 643 DWSXGK 660
+WS K
Sbjct: 209 EWSKKK 214
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 87.0 bits (206), Expect = 1e-17
Identities = 60/186 (32%), Positives = 82/186 (44%), Gaps = 6/186 (3%)
Frame = +1
Query: 121 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 301 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 477
N+D ++ ++ + D R+ LE+EK+D+ +I + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 478 LRGKFVKPTLKKVSKY---XXXXXXXXXXXXXXXXRNQLKVVKKXE-FT-LEEEDKEKKP 642
LRGKFVKP+LKKVSKY RN LK VKK FT + + K KP
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKMAEAKKEDGSKNLRNNLKTVKKESVFTQIANKKKSDKP 208
Query: 643 DWSXGK 660
+WS K
Sbjct: 209 EWSKKK 214
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +1
Query: 325 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQ 468
N + + +K K+ H+RI +LE EK+DLE +R++ ++ +LN +
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNER 1090
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 316 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL-RGKF 492
K +++ + +K K H RI +LE EK+DLE +R++ ++ +LN + + R K
Sbjct: 125 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 184
Query: 493 VKPTL 507
+K L
Sbjct: 185 LKKGL 189
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 316 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL-RGKF 492
K +++ + +K K H RI +LE EK+DLE +R++ ++ +LN + + R K
Sbjct: 229 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 288
Query: 493 VKPTL 507
+K L
Sbjct: 289 LKKGL 293
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 352 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQ 468
+K K+ H+RI +LE +K+DLE +R++ ++ +LN +
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 352 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQ 468
+K K+ H+RI +LE +K+DLE +R++ ++ +LN +
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 34.3 bits (75), Expect = 0.094
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 325 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 459
N + + +K K+ H+RI +LE EK+DLE +R++ + L
Sbjct: 209 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDPKQL 253
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNS-QVNDLRGKFVKPTL 507
+K + H RI +LE EK+DLE +R+D ++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNS-QVNDLRGKFVKPTL 507
+K + H RI +LE EK+DLE +R+D ++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +1
Query: 343 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVS 519
ED + R+C+ Y + + R+ + + +LEY K K+ + + + + + K + L K++
Sbjct: 671 EDVVNRLCESYKKLLVRVAELETELEY-EKEKNRALQETINNSSSVDSKINQEKLNKIN 728
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 379 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 477
E I L K + E ++K+KD+E+S + S++ D
Sbjct: 1074 ELIEELNRHKHEQEQVIKKKDIELSSIQSRLED 1106
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 424 IVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKY 525
+++ K+ EIS+ +S +NDL+ K + + KK +KY
Sbjct: 435 LLEEKNKEISERDSSINDLKEKLAE-SEKKATKY 467
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 424 IVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKY 525
+++ K+ EIS+ +S +NDL+ K + + KK +KY
Sbjct: 437 LLEEKNKEISERDSSINDLKEKLAE-SEKKATKY 469
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 424 IVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKY 525
+++ K+ EIS+ +S +NDL+ K + + KK +KY
Sbjct: 437 LLEEKNKEISERDSSINDLKEKLAE-SEKKATKY 469
>AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical
protein ZC190.5 protein.
Length = 311
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -2
Query: 536 NLFSYLETFFSVGLTN--LPLRSLTWEFRSEISI---SFLLTMYSRSNFXXXXXXXXXXX 372
++F YL + LT LRS TWEF E + S + ++S +
Sbjct: 54 SIFEYLNSSKYYALTPEFATLRSKTWEFIHEFGVCLQSLSMLLFSMERYSAIRYPDFHAS 113
Query: 371 SLQTLLIVSSLASSMFLGL 315
+ +LI S+ S++FL L
Sbjct: 114 TTFVVLIYVSIVSAVFLAL 132
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 331 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 504
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 331 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 504
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 331 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 504
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 446 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 505
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 331 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 504
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical
protein T23B12.5 protein.
Length = 224
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 497 LTNLPLRSLTWEFRSEISISFLLTMYSRSNFXXXXXXXXXXXSLQTLLIVSSLASSMFLG 318
L NLPL + W F S S+ L + R + L+ L++SS+ ++FL
Sbjct: 39 LLNLPLERIFWNFLSLSSVPLQLFVVLR-QYMLTFSTSNKLQLLRITLVISSVFQTLFLT 97
Query: 317 L 315
L
Sbjct: 98 L 98
>Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical
protein C33D9.5 protein.
Length = 472
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 349 TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 474
T KR+ + YH I L++ + Y +KRK + + + ++N
Sbjct: 200 TTKRLMEHYHIEIDNLKEAHSEEMYKIKRKYSTLEEYSEEIN 241
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 331 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 459
D+ E I+ V + + RLE+EK DLE ++ + E+S +
Sbjct: 1072 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1114
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 331 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 459
D+ E I+ V + + RLE+EK DLE ++ + E+S +
Sbjct: 1145 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1187
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 331 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 459
D+ E I+ V + + RLE+EK DLE ++ + E+S +
Sbjct: 1145 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,142
Number of Sequences: 27780
Number of extensions: 169782
Number of successful extensions: 708
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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