Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0459
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02640.2 68417.m00359 bZIP transcription factor family protei...    31   1.1  
At4g02640.1 68417.m00358 bZIP transcription factor family protei...    31   1.1  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    30   1.9  
At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit...    29   2.5  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    28   5.8  
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea...    28   5.8  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   7.6  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    28   7.6  

>At4g02640.2 68417.m00359 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 417

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +1

Query: 322 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 501
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+    
Sbjct: 205 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 262

Query: 502 TLKKVS 519
            LK++S
Sbjct: 263 LLKQLS 268


>At4g02640.1 68417.m00358 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; identical to cDNA bZIP protein BZO2H1,
           alternatively spliced GI:10954094
          Length = 411

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +1

Query: 322 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKP 501
           +++D+ NE T     +D  ++  R+   +       +RK  + SDL +QVNDL+G+    
Sbjct: 199 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 256

Query: 502 TLKKVS 519
            LK++S
Sbjct: 257 LLKQLS 262


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
            identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
 Frame = +1

Query: 379  ERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVSKYXXXXXXXXXXX 558
            +++A L+ ++ +LE  +++K  EIS+  SQ+ +L+ + +     KV  +           
Sbjct: 879  QQVASLDSQRAELEIQLEKKSEEISEYLSQITNLKEEII----NKVKVHESILEEINGLS 934

Query: 559  XXXXXRN-QLKVVKKXEFTLEEEDKEKKPD 645
                 R  +L+ + K    L+EE + KK +
Sbjct: 935  EKIKGRELELETLGKQRSELDEELRTKKEE 964


>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
           gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 145

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 316 KPKNIDDANEDTIKRVCKDYHERIARLED 402
           K KN++ A EDT+    K+Y + +A+L+D
Sbjct: 53  KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 269 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSL 430
           +++ L+  +S R G+    +  TPT+ +     K T+NA+ +L+      N++L
Sbjct: 40  SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93


>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to LACK protective antigen (GI:13625467)
           [Leishmania donovani]
          Length = 804

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 326 TLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSLKGKIW 445
           TLT  TK+   G ++  + AS + + + S+WNTS     W
Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616


>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 385 IARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 504
           ++ L   K  L  ++++KD EIS+ NS +     K VK T
Sbjct: 117 MSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLT 156


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 346 DTIKRVCKDYHERIARLEDEKFDLEYIV 429
           +T  ++C+ Y E  A  +  KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,908,316
Number of Sequences: 28952
Number of extensions: 161564
Number of successful extensions: 485
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)