Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0457
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.12 
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   2.0  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   2.6  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    27   2.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   6.0  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.0  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   6.0  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   7.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   7.9  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    25   7.9  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 220 TRSRPRHVTAGVPQGSALSPLLFSLYINDIPRY 122
           T +R ++   G PQGS +SP+L ++Y++ +  +
Sbjct: 410 TENRYKYDIVGTPQGSIVSPILANIYLHQLDEF 442


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 7   PLSHGGSRGLKSSMKQRLLPTRVVDGGVIGEERQ 108
           P+S G SRG  SS++Q++  +  ++ G + E  Q
Sbjct: 580 PVSRGLSRGTSSSLQQKVKASTPLNSGALNETVQ 613


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 553 SLIMRTPLSGW--WCKGKSRAKDLADDLQHKCLLSLCETSCHMAS 681
           SL+   P+ G+  +   K+  ++LAD L+ +C+L   E S ++ S
Sbjct: 162 SLLSSLPIIGYSAYSPVKAAVRNLADSLRQECILYDIEVSVYLPS 206


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 410 YRHCHVKNSVKENAAHSMPIFFLLCY 333
           Y HC V  ++ + A   M I FL CY
Sbjct: 32  YFHCAVPRAISQRALKPMDIPFLQCY 57


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 190 GVPQGSALSPLLFSLYINDI 131
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 604 RAKDLADDLQHKCLLSLCETSCHMASHRQNIS 699
           +AK ++D  +HK  +   E   H ASH   IS
Sbjct: 255 KAKSISDATKHKNEIFQLEEKLHEASHEAEIS 286


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 604 RAKDLADDLQHKCLLSLCETSC 669
           +  DL DD++++ L +LC+T C
Sbjct: 750 KLNDLLDDVKNETLQALCKTVC 771


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 504 SFNRHIRLRILKFFRHIAH 560
           SF+R+I  R+L+ +RHIA+
Sbjct: 346 SFSRYITNRLLQQYRHIAY 364


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 549 HIAHNEDSIERLVVQGKVEGKRSRGRSPT*MFALTLRNIVPHGVASPEH 695
           H A  ED + +  +  KV   R+   SP      ++  + PHG++SP+H
Sbjct: 312 HFAEIEDELRQQFLDIKVG--RANASSPR---RKSISIVKPHGISSPKH 355


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 30  RSEVVDEATPSSYTSSRWRCHRRRAPDGSPXYRGISLIYKLNSNGER 170
           R E  +     +Y     + H  + P+G   ++ ISL Y++ S+ +R
Sbjct: 14  RPEASEAELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQR 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,551
Number of Sequences: 5004
Number of extensions: 60304
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)