Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0457
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0856 + 20336390-20336906,20337276-20337397                       29   2.7  
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659...    29   4.7  
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164...    28   6.2  
08_02_0059 - 11778739-11780998,11781744-11781751                       28   6.2  
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614     28   6.2  
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985...    28   6.2  
08_02_0109 - 12642682-12643494                                         28   8.2  
05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386           28   8.2  

>04_03_0856 + 20336390-20336906,20337276-20337397
          Length = 212

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 104 RSSPMTPPST-TRVGRRRCFIDDFRPRLPPWDSG 6
           RSSP    S  TRVGRRR F   F    P W +G
Sbjct: 10  RSSPRGDASAPTRVGRRRAFPLPFASPPPEWPAG 43


>02_02_0604 -
           12064451-12065683,12065729-12065827,12065858-12065955,
           12066782-12066924,12067233-12067729
          Length = 689

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -1

Query: 238 RYRVEGTRSRPRHVTAGVPQGSALSPLLFSL 146
           R  + GT S P     G+ QG  LSPLLF L
Sbjct: 216 RIDINGTLSDPFKPMRGLRQGDPLSPLLFVL 246


>08_02_1081 +
           24215323-24215335,24215450-24215572,24216241-24216489,
           24218517-24218720,24218864-24218993,24219610-24219679,
           24219766-24219900,24219996-24220209,24220314-24220455,
           24220630-24220851,24220997-24221195
          Length = 566

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 354 YIFPLVLSNTCKKEQTQTVTAIEAL-LSDTLDIS*VILRS-DIESRERVPGPVTSQPESR 181
           Y+FP    N+      +T  A  A   ++T  +S V  RS D  S   V   VTSQP ++
Sbjct: 331 YMFPFT-GNSDNNNAVETAAASGAQDQAETDPMSRVSYRSVDTPSPNNVADKVTSQPHAQ 389

Query: 180 KAPPSP 163
              PSP
Sbjct: 390 LVRPSP 395


>08_02_0059 - 11778739-11780998,11781744-11781751
          Length = 755

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 383 HYFLHDSVYIKAISAAYK 436
           H+FLHDSVY+ A S A++
Sbjct: 326 HFFLHDSVYLFARSEAHE 343


>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
          Length = 248

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 223 GTRSRPRHVTAGVPQGSALSP 161
           G RSRPR   AG PQ +A SP
Sbjct: 156 GRRSRPRRCLAGRPQATAGSP 176


>05_06_0279 +
           26896997-26897457,26898100-26898220,26898310-26898586,
           26898735-26898895
          Length = 339

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 245 FVPISSRGNAFPAPSRHSRSPARLRPLPVTI 153
           F+P ++ G+A  AP+R  R+P R R +P T+
Sbjct: 53  FLPAAA-GSACEAPARKKRTPGRWRRIPRTL 82


>08_02_0109 - 12642682-12643494
          Length = 270

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 51  ATPSSYTSSRWRCHRRRAPDGSPXYRG 131
           A P     SRWR  RRR P G    RG
Sbjct: 96  AGPGVDDESRWRRRRRRGPGGGDDSRG 122


>05_01_0409 + 3230761-3230856,3231463-3231560,3232747-3233386
          Length = 277

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 30  RSEVVDEATPSSYTSSRWRCHRRRAPDGS 116
           R E++ + +P S  S  +RC+  + P+GS
Sbjct: 65  RDEIISQYSPMSEDSDDYRCYDTQLPNGS 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,559,832
Number of Sequences: 37544
Number of extensions: 421789
Number of successful extensions: 1351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)