Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0457
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021123-1|AAH21123.2|  987|Homo sapiens sperm antigen with calp...    31   4.0  
AY816329-1|AAW30002.1| 1068|Homo sapiens structure protein NSP5b...    31   4.0  
AY816327-1|AAW30000.1|  987|Homo sapiens structure protein NSP5a...    31   4.0  
AL354880-1|CAI18904.1|  173|Homo sapiens SAM domain containing 1...    30   6.9  
AL034350-1|CAI23090.1|  173|Homo sapiens SAM domain containing 1...    30   6.9  
AK131343-1|BAD18499.1|  133|Homo sapiens protein ( Homo sapiens ...    30   9.1  

>BC021123-1|AAH21123.2|  987|Homo sapiens sperm antigen with
           calponin homology and coiled-coil domains 1 protein.
          Length = 987

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 213 PGPVTSQPESRKAPPSPRYYSVCISMIYPGXPET 112
           P PV  +PES +   + R+  VC+S   P  PE+
Sbjct: 702 PPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPES 735


>AY816329-1|AAW30002.1| 1068|Homo sapiens structure protein NSP5b3b
           protein.
          Length = 1068

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 213 PGPVTSQPESRKAPPSPRYYSVCISMIYPGXPET 112
           P PV  +PES +   + R+  VC+S   P  PE+
Sbjct: 783 PPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPES 816


>AY816327-1|AAW30000.1|  987|Homo sapiens structure protein NSP5a3b
           protein.
          Length = 987

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 213 PGPVTSQPESRKAPPSPRYYSVCISMIYPGXPET 112
           P PV  +PES +   + R+  VC+S   P  PE+
Sbjct: 702 PPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPES 735


>AL354880-1|CAI18904.1|  173|Homo sapiens SAM domain containing 1
           protein.
          Length = 173

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 162 GERAEPCGTPAVT*RGRERVPSTRYRNEEL 251
           G R EPCG PA   RG  R  +T  R+ EL
Sbjct: 93  GRRGEPCGGPAQGTRGDSRGHTTAPRSREL 122


>AL034350-1|CAI23090.1|  173|Homo sapiens SAM domain containing 1
           protein.
          Length = 173

 Score = 30.3 bits (65), Expect = 6.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 162 GERAEPCGTPAVT*RGRERVPSTRYRNEEL 251
           G R EPCG PA   RG  R  +T  R+ EL
Sbjct: 93  GRRGEPCGGPAQGTRGDSRGHTTAPRSREL 122


>AK131343-1|BAD18499.1|  133|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16361 fis, clone THYMU2030462. ).
          Length = 133

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 296 VTVCVCSFLHVFDNTRGKI*ALSVPHFLLHYFLHDS 403
           V VC+C + H++ NT+  I   +  HF   +  H+S
Sbjct: 29  VCVCICIYTHIYINTQTHIYTNTRIHFRPQFLAHNS 64


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,609,385
Number of Sequences: 237096
Number of extensions: 2319607
Number of successful extensions: 17793
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17785
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)