Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0457
(700 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 49 5e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 49 5e-06
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 49 5e-06
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 49 5e-06
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 45 1e-04
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 44 3e-04
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 44 3e-04
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 43 3e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 42 6e-04
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 42 8e-04
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 42 0.001
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 42 0.001
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 41 0.001
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 41 0.001
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 40 0.002
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 40 0.002
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 40 0.002
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 40 0.002
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 40 0.002
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 40 0.003
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 38 0.017
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 37 0.030
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 36 0.070
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 32 0.65
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 31 1.5
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 49.2 bits (112), Expect = 5e-06
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -1
Query: 283 FTF*YTRHILGNSSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
+ F + L N +F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 209 YLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 261
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 5e-06
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -1
Query: 283 FTF*YTRHILGNSSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
+ F + L N +F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 656 YLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 708
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 5e-06
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -1
Query: 283 FTF*YTRHILGNSSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
+ F + L N +F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 656 YLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 708
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 49.2 bits (112), Expect = 5e-06
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -1
Query: 283 FTF*YTRHILGNSSFRYRVEG-TRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
+ F + L N +F R++G T SR ++ AGVPQGS L P+L+S+Y +D+P
Sbjct: 656 YLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMP 708
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 44.8 bits (101), Expect = 1e-04
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = -1
Query: 256 LGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L + F RV + S PR + AGVPQGS L PLL+S++ D+P
Sbjct: 618 LEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLP 660
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 43.6 bits (98), Expect = 3e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = -1
Query: 265 RHILGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRY 122
+ L +F V+G +S + + AGVPQGS L P L+S++ +D+P +
Sbjct: 616 KSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTH 663
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 43.6 bits (98), Expect = 3e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = -1
Query: 265 RHILGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRY 122
+ L +F V+G +S + + AGVPQGS L P L+S++ +D+P +
Sbjct: 418 KSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTH 465
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = -1
Query: 256 LGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N+ F R + + SR + AGVPQGS L P+L++LY D P
Sbjct: 613 LYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFP 655
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 42.3 bits (95), Expect = 6e-04
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = -1
Query: 256 LGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N F R + + SR + AGVPQGS L P+L++LY D P
Sbjct: 613 LYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFP 655
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 41.9 bits (94), Expect = 8e-04
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = -1
Query: 241 FRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 125
F R S +V AGVPQGS L PLL+ LY +D+P+
Sbjct: 622 FAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQ 660
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 41.5 bits (93), Expect = 0.001
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = -1
Query: 265 RHILGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 125
++ L + F + ++S R + AGVPQGS L P LF+++ +DIP+
Sbjct: 640 QNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQ 686
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 41.5 bits (93), Expect = 0.001
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = -1
Query: 265 RHILGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 125
++ L + F + ++S R + AGVPQGS L P LF+++ +DIP+
Sbjct: 588 QNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQ 634
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 LGNSSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N +F + + G SR + AGVPQGS L PLL+S++ +D+P
Sbjct: 662 LTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMP 705
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 LGNSSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N +F + + G SR + AGVPQGS L PLL+S++ +D+P
Sbjct: 674 LTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLYSIFSSDMP 717
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 LGNSSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N +F + + G SR + AGVPQGS L P+L+S++ +D+P
Sbjct: 546 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMP 589
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 LGNSSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N +F + + G SR + AGVPQGS L P+L+S++ +D+P
Sbjct: 662 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMP 705
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 LGNSSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N +F + + G SR + AGVPQGS L P+L+S++ +D+P
Sbjct: 662 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMP 705
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 LGNSSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N +F + + G SR + AGVPQGS L P+L+S++ +D+P
Sbjct: 624 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMP 667
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 256 LGNSSFRYRVE-GTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L N +F + + G SR + AGVPQGS L P+L+S++ +D+P
Sbjct: 662 LTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILYSIFSSDMP 705
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 39.9 bits (89), Expect = 0.003
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -1
Query: 241 FRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
F R + S + AGVPQGS L P+L++LY DIP
Sbjct: 159 FAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIP 196
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 37.5 bits (83), Expect = 0.017
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -1
Query: 250 NSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDI 131
N SFR R+ S + G+PQGS LS +LF + I DI
Sbjct: 620 NRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDI 659
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 36.7 bits (81), Expect = 0.030
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 256 LGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIP 128
L + F R S + AGVPQGS L P L+ +Y DIP
Sbjct: 615 LYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIP 657
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 35.5 bits (78), Expect = 0.070
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = -1
Query: 271 YTRHILGNSSFRYRVEG--TRSRPR--HVTAGVPQGSALSPLLFSLYINDI 131
Y R ++GN FR RV T PR V+AGVPQGS L P+L+++ + I
Sbjct: 582 YIRGVIGNY-FRDRVLWYVTEDGPRSHQVSAGVPQGSVLGPILWNIMYDGI 631
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 32.3 bits (70), Expect = 0.65
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 271 YTRHILGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDI 131
Y ++ + N RV S P + G+PQGS +S +LF + N +
Sbjct: 605 YIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKL 651
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 205 RH-VTAGVPQGSALSPLLFSLYINDIPR 125
RH VT GVPQGS L PLL++ + I R
Sbjct: 44 RHQVTGGVPQGSVLGPLLWNTMYDGILR 71
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,568,919
Number of Sequences: 53049
Number of extensions: 717722
Number of successful extensions: 1900
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1900
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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