Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0457
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 54 7e-08
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 38 0.009
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 35 0.064
AF025461-7|AAB70997.2| 330|Caenorhabditis elegans Seven tm rece... 35 0.064
AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical ... 31 1.0
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 31 1.0
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 29 2.4
Z83125-8|CAB05623.1| 507|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical ... 29 3.2
Z92812-4|CAB07278.1| 313|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z92812-1|CAB07276.1| 334|Caenorhabditis elegans Hypothetical pr... 29 4.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 4.2
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 5.6
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 5.6
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 5.6
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 5.6
AF022984-1|AAB69953.1| 540|Caenorhabditis elegans Hypothetical ... 28 5.6
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocar... 27 9.8
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = -1
Query: 271 YTRHILGNSSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDI 131
+ L N SFR R+ T S + T GVPQG+ LSPLLF +Y+NDI
Sbjct: 49 WVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDI 95
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -1
Query: 286 SFTF*YTRHILGNSSFRYRVEGTRSRPRH-VTAGVPQGSALSPLLFSLYINDI 131
S T + + L N +F ++ S+ + +++GVPQGS PLLF L+IN++
Sbjct: 847 SLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNL 899
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 34.7 bits (76), Expect = 0.064
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -1
Query: 190 GVPQGSALSPLLFSLYINDIP 128
GVPQGS +SP LF+ Y+ D+P
Sbjct: 532 GVPQGSVISPNLFTFYLKDMP 552
>AF025461-7|AAB70997.2| 330|Caenorhabditis elegans Seven tm
receptor protein 148 protein.
Length = 330
Score = 34.7 bits (76), Expect = 0.064
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = +3
Query: 351 YRH*VCRIFFYTIFYMTVSILRQSLLHINAFISL*CIESALEN*HWC*N----IY--SFN 512
YRH +C Y++ Y + +L Q ++HI I + ++S L+ W N +Y SF
Sbjct: 37 YRHVMCTFALYSLVYAWIEVLTQPVMHIKGPIFIVIMDSPLKYQKWIGNDLTCLYCGSFA 96
Query: 513 RHIRLRILKFF-RHIA 557
I L +FF R++A
Sbjct: 97 LVISLLAAQFFYRYVA 112
>AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical
protein K06H6.4 protein.
Length = 467
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 692 FWRCDAMWHDVSQSESKH 639
FWR D MWHDV ++ H
Sbjct: 243 FWRADYMWHDVQINDCHH 260
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 123 YRGISLIYKLNSNGERAEPCGTPAVT*RGRER 218
+ ISL S GER +PCGTP G E+
Sbjct: 47 FADISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 199 VTAGVPQGSALSPLLFSLYINDI 131
+++GVP+GS P LF ++IN +
Sbjct: 53 ISSGVPKGSVSGPFLFLIFINSL 75
>Z83125-8|CAB05623.1| 507|Caenorhabditis elegans Hypothetical
protein T15D6.10 protein.
Length = 507
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 692 FWRCDAMWHDVSQSESKH 639
FWR D MWHD ++ H
Sbjct: 279 FWRADYMWHDAQINDCHH 296
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = -2
Query: 240 SDIESRERVPGPVTSQ-----PESRKAPPSPRYYSV-CISMIYPGXPETHLALFADDTAI 79
S IES E V P++ P ++ P P+ ++ I +I G + L LF+ AI
Sbjct: 339 SRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGFIPLIIMGSLAS-LLLFSAGAAI 397
Query: 78 YYSCRKKAL 52
Y+ C+ K++
Sbjct: 398 YFGCKLKSM 406
>AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical
protein C14C6.8 protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 692 FWRCDAMWHDVSQSESKH 639
FWR D MWH+V ++ H
Sbjct: 224 FWRADYMWHEVQINDCHH 241
>Z92812-4|CAB07278.1| 313|Caenorhabditis elegans Hypothetical
protein T03E6.4 protein.
Length = 313
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 351 YRH*VCRIFFYTIFYMTVSILRQSLLHINAFISL*CIESALE 476
YRH +C +++ Y V + Q ++HI + + ++S L+
Sbjct: 38 YRHLMCAFAVFSLIYAWVEVFTQPVMHIKGPVFIVFMDSPLK 79
>Z92812-1|CAB07276.1| 334|Caenorhabditis elegans Hypothetical
protein T03E6.1 protein.
Length = 334
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 351 YRH*VCRIFFYTIFYMTVSILRQSLLHINAFISL*CIESALE 476
YRH +C +++ Y V + Q ++HI + + ++S L+
Sbjct: 38 YRHLMCAFAVFSLIYAWVEVFTQPVMHIKGPVFIVFMDSPLK 79
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -3
Query: 212 PAPSRHSRSPARLRPLPVTIQFVYQ*YTPVXRRPIWRSSPMTPPSTTRVGRRRCFIDDFR 33
P P R SR+ P P + TP R P R PMTPPS R R + R
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPR---TPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPR 181
Query: 32 --PRLPP 18
PR PP
Sbjct: 182 NPPRTPP 188
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 252 VILRSDIESRERVPGPVTSQPESRKAPPSPRY 157
+I+R DI + R P PV P R PP P Y
Sbjct: 138 MIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 168
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 252 VILRSDIESRERVPGPVTSQPESRKAPPSPRY 157
+I+R DI + R P PV P R PP P Y
Sbjct: 779 MIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 809
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 252 VILRSDIESRERVPGPVTSQPESRKAPPSPRY 157
+I+R DI + R P PV P R PP P Y
Sbjct: 779 MIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 809
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 252 VILRSDIESRERVPGPVTSQPESRKAPPSPRY 157
+I+R DI + R P PV P R PP P Y
Sbjct: 779 MIIREDIPAPPRPPPPVELSPPPR-PPPPPEY 809
>AF022984-1|AAB69953.1| 540|Caenorhabditis elegans Hypothetical
protein ZK488.6 protein.
Length = 540
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = -2
Query: 384 CKRK--CGTLNAYIFPLVLSNTCKKEQTQTVTAIEALLSDTLDIS*VILRSDIESRERVP 211
C+R+ + IFP ++ T+ +T I L++TL+ S I+ +ES +
Sbjct: 180 CRRREIMDPFKSTIFPRCTVFCPRRPGTKFIT-ISKDLNETLEYSIPIVPR-LESNIKTQ 237
Query: 210 GPVTSQPESRKAPPSPRYYSVCISMIYPGXPE 115
V P+ PP Y++VC++ +Y P+
Sbjct: 238 ISVLKPPKPISEPP--HYFTVCMATLYGDEPK 267
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 230 SRGNAFPAPSRHSRSP-ARLRPLPVTIQFVYQ*YTPVXRRPIWRSSPMTPPSTTR 69
SR + PAP+R RSP A P P + + +P RR S+ +PP+ R
Sbjct: 336 SRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRR 390
>Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical
protein C41G7.5b protein.
Length = 560
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 221 NAFPAPSRHSRSPARLRPLPVTIQFVYQ*YTPVXRRPIWRSSPMTPPSTTRVGRRR 54
++F R+ +S A L PLP ++ P ++ S P+ P+TT+ RRR
Sbjct: 367 DSFLQSPRNLQSTAAL-PLPSVLKDDQDCLEPSTSNSLFPSVPVPTPTTTKANRRR 421
>Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical
protein C41G7.5a protein.
Length = 602
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 221 NAFPAPSRHSRSPARLRPLPVTIQFVYQ*YTPVXRRPIWRSSPMTPPSTTRVGRRR 54
++F R+ +S A L PLP ++ P ++ S P+ P+TT+ RRR
Sbjct: 409 DSFLQSPRNLQSTAAL-PLPSVLKDDQDCLEPSTSNSLFPSVPVPTPTTTKANRRR 463
>AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocarbon
receptor orthologAHR-1 protein.
Length = 602
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 221 NAFPAPSRHSRSPARLRPLPVTIQFVYQ*YTPVXRRPIWRSSPMTPPSTTRVGRRR 54
++F R+ +S A L PLP ++ P ++ S P+ P+TT+ RRR
Sbjct: 409 DSFLQSPRNLQSTAAL-PLPSVLKDDQDCLEPSTSNSLFPSVPVPTPTTTKANRRR 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,628
Number of Sequences: 27780
Number of extensions: 361524
Number of successful extensions: 1026
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -