Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0457
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    26   0.40 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.5  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 687 AMRRHVARCFAE*EQTFMLEIVREIFCPRLSL 592
           +++RHVA   AE ++ +   I   ++C R SL
Sbjct: 20  SLKRHVADKHAERQEEYRCVICERVYCSRNSL 51


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 513 Y*NYKYSNTNVNFQEQTQYITN 448
           Y NY Y+N N N  ++  Y  N
Sbjct: 101 YNNYNYNNNNYNNYKKLYYNIN 122


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 507 NYKYSNTNVNFQEQTQYITN 448
           NY YSN N N  +Q  Y  N
Sbjct: 88  NYNYSNYNNNNYKQLCYNIN 107


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 507 NYKYSNTNVNFQEQTQYITN 448
           NY YSN N N  +Q  Y  N
Sbjct: 88  NYNYSNYNNNNYKQLCYNIN 107


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 507 NYKYSNTNVNFQEQTQYITN 448
           NY YSN N N  +Q  Y  N
Sbjct: 88  NYNYSNYNNNNYKQLCYNIN 107


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 507 NYKYSNTNVNFQEQTQYITN 448
           NY YSN N N  +Q  Y  N
Sbjct: 88  NYNYSNYNNNNYKQLCYNIN 107


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 507 NYKYSNTNVNFQEQTQYITN 448
           NY YSN N N  +Q  Y  N
Sbjct: 88  NYNYSNYNNNNYKQLCYNIN 107


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 507 NYKYSNTNVNFQEQTQYITN 448
           NY YSN N N  +Q  Y  N
Sbjct: 88  NYNYSNYNNNNYKQLCYNIN 107


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -2

Query: 174 PPSPRYYSVCISMIYPGXPETH 109
           PP P   S C+   Y    E H
Sbjct: 183 PPVPTVTSACVGSAYTPLKEDH 204


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 213 PGPVTSQPESRKAPPS 166
           PG V   PE++  PPS
Sbjct: 287 PGEVDLPPETQPTPPS 302


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -2

Query: 174 PPSPRYYSVCISMIYPGXPETHLALFADDTAIYYSCR 64
           PP+P       S+      +  L L A D A+Y   R
Sbjct: 827 PPTPNLLRYFASIATNPKEQAQLNLLASDPAVYEDWR 863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,304
Number of Sequences: 438
Number of extensions: 5155
Number of successful extensions: 26
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)